10.6084/M9.FIGSHARE.21405904
Yan Liu
Yan
Liu
Nanjing Agricultural University
Polonca Štefanič
Polonca
Štefanič
University of Ljubljana
Youzhi Miao
Youzhi
Miao
Nanjing Agricultural University
Yansheng Xue
Yansheng
Xue
Nanjing Agricultural University
Weibing Xun
Weibing
Xun
Nanjing Agricultural University
Nan Zhang
Nan
Zhang
Nanjing Agricultural University
Qirong Shen
Qirong
Shen
Nanjing Agricultural University
Ruifu Zhang
Ruifu
Zhang
Nanjing Agricultural University
Zhihui Xu
Zhihui
Xu
0000-0002-3987-8836
Nanjing Agricultural University
Ines Mandic-Mulec
Ines
Mandic-Mulec
University of Ljubljana
Additional file 2 of Housekeeping gene gyrA, a potential molecular marker for Bacillus ecology study
Additional file 2: TableS1 The information of 127 strains for colony PCR. TableS2 The genomes information for nucleotide variability analysis of gyrA gene and 16S rRNA gene in inter- and intraspecies Bacillus. TableS3 The gyrA gene database information of Bacillus for computer simulation. TableS4 The general primers converted from degenerate primer pair gyrA3. TableS5 The genomes information for SNP analysis of gyrA gene and 16S rRNA gene in four Bacillus species. TableS6 The information of sequences amplified by three gyrA gene primer pairs in computer simulation. TableS7 The analysis results of mock community amplicon sequencing. DatasetS1 The 16S rRNA gene sequences of the eight Bacillus strains for mock Bacillus community. DatasetS2 The gyrA gene sequences of the eight Bacillus strains for mock Bacillus community. DatasetS3 The 16S rRNA gene sequences of the seven Bacillus strains.
Microbiology
Genetics
figshare
2022
2022-10-27
2023-06-13
Dataset
248109 Bytes
10.1046/j.1365-2958.2002.02977.x
10.1046/j.1365-2958.2002.02977.x
10.1134/S0003683813070028
10.1134/S0003683813070028
10.1023/A%3A1026555830014
10.1023/A%3A1026555830014
10.1128/CMR.17.4.840-862.2004
10.1128/CMR.17.4.840-862.2004
10.1093/nar/gkt1244
10.1093/nar/gkt1244
10.1126/science.6243420
10.1126/science.6243420
10.1128/AEM.70.6.3664-3672.2004
10.1128/AEM.70.6.3664-3672.2004
10.1038/nmeth.2604
10.1038/nmeth.2604
10.1101/081257
10.1101/081257
10.1038/s42003-019-0540-1
10.1038/s42003-019-0540-1
10.1128/JCM.42.1.179-185.2004
10.1128/JCM.42.1.179-185.2004
10.3389/fmicb.2015.01355
10.3389/fmicb.2015.01355
10.1038/s41467-019-13036-1
10.1038/s41467-019-13036-1
10.1099/00207713-50-1-127
10.1093/nar/gkf436
10.1093/nar/gkf436
10.1093/nar/gks808
10.1093/nar/gks808
10.1093/nar/gkz239
10.1093/nar/gkz239
10.1016/j.syapm.2012.11.003
10.1016/j.syapm.2012.11.003
10.1186/1471-2180-6-33
10.1186/1471-2180-6-33
10.1128/microbiolspec.TBS-0017-2013
10.1128/microbiolspec.TBS-0017-2013
10.1038/ismej.2011.139
10.1038/ismej.2011.139
10.1016/j.syapm.2015.09.008
10.1016/j.syapm.2015.09.008
10.1111/jam.13887
10.1111/jam.13887
10.1186/s12866-019-1546-z
10.1186/s12866-019-1546-z
10.1111/1751-7915.12258
10.1111/1751-7915.12258
10.1371/journal.pone.0043093
10.1371/journal.pone.0043093
10.1371/journal.pone.0204629
10.1371/journal.pone.0204629
10.1093/nar/gks1219
10.1093/nar/gks1219
10.1099/00207713-44-2-256
10.1099/00207713-44-2-256
10.1093/molbev/msx248
10.1093/molbev/msx248
10.1016/j.syapm.2009.09.002
10.1016/j.syapm.2009.09.002
10.1128/JB.01290-08
10.1128/JB.01290-08
10.1111/j.1462-2920.2012.02717.x
10.1111/j.1462-2920.2012.02717.x
10.1073/pnas.1512671112
10.1073/pnas.1512671112
10.1128/AEM.01282-13
10.1128/AEM.01282-13
10.1093/molbev/msr121
10.1093/molbev/msr121
10.1111/1751-7915.13771
10.1111/1751-7915.13771
10.1093/nar/24.17.3381
10.1093/nar/24.17.3381
10.1371/journal.pone.0030600
10.1371/journal.pone.0030600
10.1038/ismej.2016.45
10.1038/ismej.2016.45
10.1099/00221287-146-10-2385
10.1099/00221287-146-10-2385
10.1099/ijsem.0.001755
10.1099/ijsem.0.001755
10.1186/s13568-022-01477-9
CC BY