10.5061/DRYAD.TF704
Ebel, Emily R.
Boston University
DaCosta, Jeffrey M.
Boston University
Sorenson, Michael D.
Boston University
Hill, Ryan I.
University of the Pacific
Briscoe, Adriana D.
Boston University
Willmott, Keith R.
University of Florida
Mullen, Sean P.
Boston University
Data from: Rapid diversification associated with ecological specialization
in Neotropical Adelpha butterflies
Dryad
dataset
2015
Limenitis
2015-03-30T15:18:07Z
2015-03-30T15:18:07Z
en
https://doi.org/10.1111/mec.13168
27934162950 bytes
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CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
Rapid diversification is often associated with morphological or ecological
adaptations that allow organisms to radiate into novel niches. Neotropical
Adelpha butterflies, which comprise over 200 species and subspecies, are
characterized by extraordinary breadth in host plant use and wing colour
patterns compared to their closest relatives. To examine the relationship
between phenotypic and species diversification, we reconstructed the
phylogenetic history of Adelpha and its temperate sister genus Limenitis
using genomewide restriction-site-associated DNA (RAD) sequencing. Despite
a declining fraction of shared markers with increasing evolutionary
distance, the RAD-Seq data consistently generated well-supported trees
using a variety of phylogenetic methods. These well-resolved phylogenies
allow the identification of an ecologically important relationship with a
toxic host plant family, as well as the confirmation of widespread,
convergent wing pattern mimicry throughout the genus. Taken together, our
results support the hypothesis that evolutionary innovations in both
larvae and adults have permitted the colonization of novel host plants and
fuelled adaptive diversification within this large butterfly radiation.
Haplotypes for all loci and individualsOutput of the final step of the
pyRAD software pipeline (Eaton and Ree, 2013). File contains both
haplotypes for 125 individuals at 144,699 loci. This is the
"raw" data set subjected to additional filtering (see scripts)
before phylogenetic analysis.all_haplotypes.txtPartitioning ScriptsThis
folder contains a short pipeline (3 Python scripts) for partitioning loci
haplotype data by the number of individuals without data. A README file
explains how to use the scripts.Partitioning.zipPhylogenetic TreesReadable
trees (.tre) corresponding to paper figures as follows:
RAxML_concat--Figure 2; BEAST--Figure 3; RAxML_presabs, RAxML_SNP, and
NJst--Figure S3; RAxML_PartitionX--Figure
S4.Tree_files.zipRaw_Reads_AGTCAGRaw reads with index
AGTCAG.AGTCAG.fastq.zipRaw_Reads_CTGAGARaw reads with index
CTGAGA.CTGAGA.fastq.zipRaw_Reads_GACTTCRaw reads with index
GACTTC.GACTTC.fastq.zipRaw_Reads_TCAGCTRaw reads with index
TCAGCT.TCAGCT.fastq.zip
Neotropics