10.5061/DRYAD.J1G5DH23
Hodkinson, Brendan P.
The Bronx Defenders
Uehling, Jessie K.
Humboldt State University
Smith, Matthew E.
Duke University
Data from: Lepidostroma vilgalysii, a new basidiolichen from the New World
Dryad
dataset
2012
Lepidostroma vilgalysii Hodkinson
phylogenetic constraint
Lepidostromataceae
lichen-forming fungi
Basidiomycota
Lepidostroma vilgalysii
2012-01-09T16:01:06Z
2012-01-09T16:01:06Z
en
https://doi.org/10.1007/s11557-011-0800-z
377269 bytes
1
CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
The lichenized basidiomycete Lepidostroma vilgalysii is described from
Mexico based on morphological analyses. The species is only the second
representative of the family Lepidostromataceae documented from the New
World, and is one of the few described lichens with an inverted
morphology, with the algae in a layer at the base of the thallus.
Molecular sequence data from the nuclear ribosomal LSU locus are used to
confirm the placement of the holotype in Lepidostroma and to evaluate the
molecular distinctiveness of the species from all other described species
in the family and genus.
Lepidostroma_RAxML_analysesInput and output files for backbone-constrained
topological and bootstrap searches performed with RAxML.sequence_renamerA
Perl script written primarily to take fasta files downloaded from GenBank
and transform the complex sequence identifiers to a standardized format as
follows: Genus_species_GenBankAccNum_GenInfoIdLepidostroma_LSUFull nuclear
ribosomal LSU alignment for the data matrix that was analyzed
phylogenetically, including exclusion sets, the backbone constraint tree,
and the best RAxML tree resulting from the ML analyses.
Mexico