10.5061/DRYAD.FR88S7F
Yurchenko, Andrey A.
Siberian Branch of the Russian Academy of Sciences
Daetwyler, Hans D.
AgriBio
Yudin, Nikolay
Siberian Branch of the Russian Academy of Sciences
Schnabel, Robert D.
University of Missouri
Vander Jagt, Christy J.
AgriBio
Soloshenko, Vladimir
Siberian Research Institute of Animal Husbandry
Lhasaranov, Bulat
Shuluuma IAPC, Kizhinga, Buryatia, Russia
Popov, Ruslan
Yakutian Research Institute of Agriculture, Yakutsk, Russia
Taylor, Jeremey F.
University of Missouri
Larkin, Denis M.
Siberian Branch of the Russian Academy of Sciences
Data from: Scans for signatures of selection in Russian cattle breed
genomes reveal new candidate genes for environmental adaptation and
acclimation
Dryad
dataset
2019
Bos taurus
native breeds
2019-08-17T00:00:00Z
2019-08-17T00:00:00Z
en
https://doi.org/10.1038/s41598-018-31304-w
15401013 bytes
1
CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
Domestication and selective breeding has resulted in over 1000 extant
cattle breeds. Many of these breeds do not excel in important traits but
are adapted to local environments. These adaptations are a valuable source
of genetic material for efforts to improve commercial breeds. As a step
toward this goal we identified candidate regions to be under selection in
genomes of nine Russian native cattle breeds adapted to survive in harsh
climates. After comparing our data to other breeds of European and Asian
origins we found known and novel candidate genes that could potentially be
related to domestication, economically important traits and environmental
adaptations in cattle. The Russian cattle breed genomes contained regions
under putative selection with genes that may be related to adaptations to
harsh environments (e.g., AQP5, RAD50, and RETREG1). We found genomic
signatures of selective sweeps near key genes related to economically
important traits, such as the milk production (e.g., DGAT1, ABCG2), growth
(e.g., XKR4), and reproduction (e.g., CSF2). Our data point to candidate
genes which should be included in future studies attempting to identify
genes to improve the extant breeds and facilitate generation of commercial
breeds that fit better into the environments of Russia and other countries
with similar climates.
Raw GGP HD150K SNP data for 9 Russian cattle breedsThis set includes 9
Russian cattle breeds genotyped on the GeneSeek HD150K SNP array. The
breeds included are: Kalmyk, Buryat, Yakut, Kazakh Whiteheaded, Kostroma,
Kholmogory, Bestuzhev, Yaroslavl, and Black
Pied.Russian_cattle_150K_Dryad_9_breeds.zipGGP HD150K SNP data for 5
breeds of Asian originThis set includes autosomal genotypes for 3 Russian
breeds of Asian origin on the GeneSeek HD150K SNP array (MAF<0.05):
Kalmyk, Yakut, and Buryat combined with the sequence-based genotypes of
Hanwoo and Illumina HD based genotypes of Japanese Black
breeds.ASIA_Group_Dryad.zipGGP HD150K SNP data for 10 breeds of European
originThis set includes autosomal genotyping data for 6 Russian breeds of
European origin genotyped on the GeneSeeek HD150K SNP array
(MAF<0.05): Bestuzhev, Black Pied, Kazakh Whiteheaded, Kholmogory,
Kostroma, and Yaroslavl combined with sequence-based genotypes of Angus,
Holstein, Jersey, and Fleckvieh from the 1000 bull genome
project.EUR_Groups_1_2_Angus_Dryad.zip
Russian Federation