10.5061/DRYAD.FFBG79CWW
Ashman, Lauren
0000-0003-1333-4678
Australian National University
Hartley, Diana
Commonwealth Scientific and Industrial Research Organisation
Jin, Mengjie
Sun Yat-sen University
Rowell, David
Australian National University
Teasdale, Luisa
Commonwealth Scientific and Industrial Research Organisation
Slipinski, Adam
Commonwealth Scientific and Industrial Research Organisation
Zwick, Andreas
Commonwealth Scientific and Industrial Research Organisation
Data from: Rhytiphora: a phylogenetic and morphological study of
Australia’s largest longhorn beetle genus
Dryad
dataset
2022
FOS: Biological sciences
Australian biogeography
Coleoptera: Cerambycidae
Rhytiphora
mitochondrial COI
complete mitochondrial DNA
morphological analyses
N/A*
2022-07-29T00:00:00Z
2022-07-29T00:00:00Z
en
https://doi.org/10.1071/is21071
4080233 bytes
4
CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
Rhytiphora Audinet-Serville is the most speciose longhorn beetle
(Cerambycidae) genus in Australia, with about 200 species (from nearly 40
former genera, now synonymised into one) distributed across the entire
continent. We used mitochondrial genome data from whole genome shotgun
sequencing and COI barcoding of museum specimens to reconstruct the
phylogeny of 68 Rhytiphora species, and analyse their morphological
diversity and biogeographic history. We recovered a monophyletic
Rhytiphora containing two distinct clades, within which all of the former
genera (except Achriotypa) are paraphyletic. Nine morphological traits
(including body size and the male setose ‘sex patches’) show strong
phylogenetic signal and can be used to differentiate between the two
clades. One clade is mainly restricted to Australia’s tropical north,
while the other, larger clade has many species along the mesic east coast.
Both clades have experienced multiple biome shifts, displaying a
remarkable flexibility in habitat occupancy.
Alignment files Rhyt_WGS_core_aa.nex (core dataset (31 taxa) concatenated
alignment of amino acids) Rhyt_WGS_core_deg.nex (core dataset concatenated
alignment of degeneracy-recoded nucleotides) Rhyt_WGS_core_nt.nex (core
dataset concatenated alignment of nucleotides) Rhyt_WGS_exp_aa.nex
(expanded dataset (96 taxa) concatenated alignment of amino acids)
Rhyt_WGS_exp_deg.nex (expanded dataset concatenated alignment of
degeneracy-recoded nucleotides) Rhyt_WGS_exp_nt.nex (expanded dataset
concatenated alignment of nucleotides) Rhyt_WGS_exp_nt_pruned (pruned
dataset (70 taxa) concatenated alignment of nucleotides) Maximum
likelihood phylogenies (IQ-TREE) Rhyt_WGS_core_aa.tree (Newick-format tree
from core amino acid dataset) Rhyt_WGS_core_deg.tree (Newick-format tree
from core degeneracy-recoded nucleotide dataset) Rhyt_WGS_core_nt.tree
(Newick-format tree from core nucleotide dataset) Rhyt_WGS_exp_aa.tree
(Nexus-format tree from expanded amino acid dataset) Rhyt_WGS_exp_deg.tree
(Nexus-format tree from expanded degeneracy-recoded nucleotide dataset)
Rhyt_WGS_exp_nt-149.tree (Nexus-format tree from expanded nucleotide
dataset, tree search #149) Rhyt_WGS_exp_nt-201.tree (Nexus-format tree
from expanded nucleotide dataset, tree search #201)
Rhyt_WGS_exp_nt-476.tree (Nexus-format tree from expanded nucleotide
dataset, tree search #476) Bayesian phylogeny (BEAST2)
Rhyt_WGS_exp_nt_BEAST.tree (Nexus-format tree from pruned nucleotide
dataset) Other files Rhyt_WGS_BGB_biomes.txt (input file for BioGeoBEARS
analyses) Rhyt_WGS_morph.csv (morphological data file for R statistical
analyses) README file README_Rhytiphora_WGS_Dryad_metadata.txt (detailed
information on the data package)