10.5061/DRYAD.DNCJSXKXQ
Gao, Zijian
0000-0001-6323-1672
University of Chinese Academy of Sciences
A chromosome-level genome assembly of the striped catfish (Pangasianodon
hypophthalmus)
Dryad
dataset
2020
2020-11-06T00:00:00Z
2020-11-06T00:00:00Z
en
218963712 bytes
2
CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
A high-quality genome assembly of a mature female individual of striped
catfish was generated by integration of short reads from an Illumina Hiseq
Xten platform, long reads from a Nanopore platform, and Hi-C sequencing
data. The Illumina short reads were sequenced at 60 X coverage, while the
Nanopore long reads covered 85 X of the genome. This assembled genome is
742.6 Mb in length, with a contig N50 of 3.5 Mb and a scaffold N50 of 29.5
Mb, of which a total of 731.7 Mb reads (98.5%) were anchored on 30
pseudo-chromosomes. Among the totally searched 4,584 BUSCO groups in the
popular actinopterygii_odb9 database, 4,279 (93.3%) BUSCO core genes were
completely identified.