10.4230/LIPICS.ICLP.2011.220
Christiansen, Henning
Henning
Christiansen
Theil Have, Christian
Christian
Theil Have
Torp Lassen, Ole
Ole
Torp Lassen
Petit, Matthieu
Matthieu
Petit
Bayesian Annotation Networks for Complex Sequence Analysis
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
2011
Probabilistic Logic Bayesian Sequence Analysis
Gallagher, John P.
John P.
Gallagher
Gelfond, Michael
Michael
Gelfond
2011
2011-06-27
2011-06-27
2011-06-27
en
urn:nbn:de:0030-drops-31649
10.4230/LIPIcs.ICLP.2011
978-3-939897-31-6
1868-8969
10.4230/LIPIcs.ICLP.2011
LIPIcs, Volume 11, ICLP 2011
Technical Communications of the 27th International Conference on Logic Programming (ICLP'11)
2013
11
21
220
230
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
Gallagher, John P.
John P.
Gallagher
Gelfond, Michael
Michael
Gelfond
1868-8969
Leibniz International Proceedings in Informatics (LIPIcs)
2011
11
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
11 pages
467149 bytes
application/pdf
Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported license
info:eu-repo/semantics/openAccess
Probabilistic models that associate annotations to sequential data are widely used in computational biology and a range of other applications. Models integrating with logic programs provide, furthermore, for sophistication and generality, at the cost of potentially very high computational complexity. A methodology is proposed for modularization of such models into sub-models, each representing a particular interpretation of the input data to be analysed. Their composition forms, in a natural way, a Bayesian network, and we show how standard methods for prediction and training can be adapted for such composite models in an iterative way, obtaining reasonable complexity results. Our methodology can be implemented using the probabilistic-logic PRISM system, developed by Sato et al, in a way that allows for practical applications.
LIPIcs, Vol. 11, Technical Communications of the 27th International Conference on Logic Programming (ICLP'11), pages 220-230