10.25897/5/TYC9-K378
Söhngen, Carola
Carola
Söhngen
Bunk, Boyke
Boyke
Bunk
https://orcid.org/0000-0002-8420-8161
Podstawka, Adam
Adam
Podstawka
Gleim, Dorothea
Dorothea
Gleim
Overmann, Jörg
Jörg
Overmann
https://orcid.org/0000-0003-3909-7201
Mobilisation of data for GFBio services - Bacterial Descriptions Use Case
Staatliche Naturwissenschaftliche Sammlungen Bayerns – SNSB IT Center, München
2020
SDD-EML
Bacteria
Bacterial Strains
Living Specimen
Bacteriology
Isolations from Soil
Microbiology
FOS: Biological sciences
FOS: Biological sciences
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Braunschweig
Staatliche Naturwissenschaftliche Sammlungen Bayerns – SNSB IT Center, München
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Braunschweig
Creative Commons Attribution 4.0 International
The description of five comprehensively annotated bacterial strains have been imported into the DiversityDescriptions in the course of the project GFBio (www.gfbio.org). The purpose of this mobilization is the availability of taxon-related descriptive information for the GFBio data portal following various standard schemas, e.g. SDD, Delta for the test and development of data pipelines and work flows.
The data has been manually annotated out of species descriptions derived by results of recently completed and ongoing projects carried out and published by researchers at the DSMZ. The ecological and environmental relevance of these strains is given by their participation in nitrogen and carbon cycles (significant exoenzyme activity) within their particular habitat. The detailed documented metabolic and physiologic profile of each strain indicates their significant adaptation to the soils of different climates. Hence, these strains are important biotic components of their environment.
Besides the availability of these data sets within DiversityDescriptions, the detailed descriptions can also be retrieved from the BacDive - The Bacterial Diversity Metadatabase ( http://bacdive.dsmz.de) portal:
Blastocatella fastidiosa Fösel et al. 2013 A2_16 (-> http://bacdive.dsmz.de/index.php?site=search&rd=23454)
Aridibacter kavangonensis Huber et al. 2014 Ac_23_E3 (-> http://bacdive.dsmz.de/index.php?search=24777)
Aridibacter famidurans Huber et al. 2014 A22_HD_4H (-> http://bacdive.dsmz.de/index.php?site=search&rd=24776)
Edaphobacter aggregans Koch et al. 2008 emend. Dedysh et al. 2012 WBG 1 (-> http://bacdive.dsmz.de/index.php?site=search&rd=133)
Edaphobacter modestus Koch et al. 2008 JBG-1 (-> http://bacdive.dsmz.de/index.php?site=search&rd=132)
When using BacDive content please consider citing the following paper:
BacDive - the Bacterial Diversity Metadatabase
Söhngen C., Bunk B., Podstawka A., Gleim D., Overmann J.
Nucleic Acids Res. 2014 Jan 1;42(1):D592-9. doi: 10.1093/nar/gkt1058. Epub 2013 Nov 7.
PMID: 24214959
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