10.20387/BONARES-T40J-7VAG
Beule, Lukas
Lukas
Beule
University of Goettingen
R script to reproduce "Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities".
BonaRes Data Centre (Leibniz Centre for Agricultural Landscape Research (ZALF))
2020
Petr Karlovsky
University of Goettingen
2200-07-01
2020-07-01
2020-07-01
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
text/comma-separated-values
File-Geodatabase (gdb)
The R script and data are available for download:
https://b-web.bonares.de/smartEditor/rest/upload/ID_7050_2020_05_13_Beule_Karlovsky.zip
R script and data for the reproduction of the paper entitled "Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities" by Lukas Beule and Petr Karlovsky.
Comparison of scaling with ranked subsampling (SRS) with rarefying for the normalization of species count data in ecology. The example provided is a library obtained from next generation sequencing of a soil bacterial community. Different alpha diversity measures, community composition, and relative abundance of taxonomic units are compared.
5.81
15.77
47.26
54.76
Federal Ministry of Education and Research
031A562A
Bonares, SIGNAL
Federal Ministry of Education and Research
031B0510A
Bonares, SIGNAL