10.15480/882.2000
Wang, Qi
Qi
Wang
Tang, Biao
Biao
Tang
Song, Lifu
Lifu
Song
0000-0003-1092-4568
1160685045
Ren, Biao
Biao
Ren
Liang, Qun
Qun
Liang
Xie, Feng
Feng
Xie
Zhuo, Ying
Ying
Zhuo
Liu, Xueting
Xueting
Liu
Zhang, Lixin
Lixin
Zhang
3DScapeCS : application of three dimensional, parallel, dynamic network visualization in Cytoscape
BioMed Central ; Springer
2013
flux balance analysis
network visualization
layout algorithm
graph layout
motion graph
570: Biowissenschaften, Biologie
004
570
TUHH Universitätsbibliothek
TUHH Universitätsbibliothek
2019-01-31
2019-01-31
2013-11-14
en
Journal Article
BMC Bioinformatics 1 (14): 322 (2013)
1471-2105
https://tubdok.tub.tuhh.de/handle/11420/2003
urn:nbn:de:gbv:830-882.026249
10.15480/882.2000
11420/2003
by
Background: The exponential growth of gigantic biological data from various sources, such as protein-protein interaction (PPI), genome sequences scaffolding, Mass spectrometry (MS) molecular networking and metabolic flux, demands an efficient way for better visualization and interpretation beyond the conventional, two-dimensional visualization tools.Results: We developed a 3D Cytoscape Client/Server (3DScapeCS) plugin, which adopted Cytoscape in interpreting different types of data, and UbiGraph for three-dimensional visualization. The extra dimension is useful in accommodating, visualizing, and distinguishing large-scale networks with multiple crossed connections in five case studies.Conclusions: Evaluation on several experimental data using 3DScapeCS and its special features, including multilevel graph layout, time-course data animation, and parallel visualization has proven its usefulness in visualizing complex data and help to make insightful conclusions.