{"data":{"id":"10.6084/m9.figshare.c.3590399.v1","type":"dois","attributes":{"doi":"10.6084/m9.figshare.c.3590399.v1","prefix":"10.6084","suffix":"m9.figshare.c.3590399.v1","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Hsiu-Yu Yu","affiliation":[],"nameIdentifiers":[]},{"name":"Eckmann, David M.","nameType":"Personal","givenName":"David M.","familyName":"Eckmann","affiliation":[],"nameIdentifiers":[]},{"name":"Portonovo S. Ayyaswamy","affiliation":[],"nameIdentifiers":[]},{"name":"Radhakrishnan, Ravi","nameType":"Personal","givenName":"Ravi","familyName":"Radhakrishnan","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Supplementary material from \"Effect of wall-mediated hydrodynamic fluctuations on the kinetics of a Brownian nanoparticle\""}],"publisher":"Figshare","container":{},"publicationYear":2016,"subjects":[{"subject":"90399 Biomedical Engineering not elsewhere classified","subjectScheme":"FOR"},{"subject":"FOS: Medical engineering","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"90499 Chemical Engineering not elsewhere classified","subjectScheme":"FOR"},{"subject":"FOS: Chemical engineering","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"91504 Fluidisation and Fluid Mechanics","subjectScheme":"FOR"},{"subject":"FOS: Other engineering and technologies","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2016-12-07","dateType":"Created"},{"date":"2016-12-07","dateType":"Updated"},{"date":"2016","dateType":"Issued"}],"language":null,"types":{"ris":"GEN","bibtex":"misc","citeproc":"article","schemaOrg":"Collection","resourceType":"Collection","resourceTypeGeneral":"Collection"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.1098/rspa.20160397","relatedIdentifierType":"DOI"},{"relationType":"IsPreviousVersionOf","relatedIdentifier":"10.6084/m9.figshare.c.3590399","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":[],"formats":[],"version":null,"rightsList":[{"rights":"CC BY","rightsUri":"https://creativecommons.org/licenses/by/4.0"}],"descriptions":[{"description":"The reactive flux formalism (Chandler 1978 \u003ci\u003eJ. Chem. Phys.\u003c/i\u003e \u003cb\u003e68\u003c/b\u003e, 2959–2970. (doi:10.1063/1.436049)) and the subsequent development of methods such as transition path sampling have laid the foundation for explicitly quantifying the rate process in terms of microscopic simulations. However, explicit methods to account for how the hydrodynamic correlations impact the transient reaction rate are missing in the colloidal literature. We show that the composite generalized Langevin equation (Yu \u003ci\u003eet al.\u003c/i\u003e 2015 \u003ci\u003ePhys. Rev. E\u003c/i\u003e \u003cb\u003e91\u003c/b\u003e, 052303. (doi:10.1103/PhysRevE.91.052303)) makes a significant step towards solving the coupled processes of molecular reactions and hydrodynamic relaxation by examining how the wall-mediated hydrodynamic memory impacts the two-stage temporal relaxation of the reaction rate for a nanoparticle transition between two bound states in the bulk, near-wall and lubrication regimes.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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