{"data":{"id":"10.6084/m9.figshare.c.2039576","type":"dois","attributes":{"doi":"10.6084/m9.figshare.c.2039576","prefix":"10.6084","suffix":"m9.figshare.c.2039576","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Nie, Maiqian","givenName":"Maiqian","familyName":"Nie","affiliation":[],"nameIdentifiers":[]},{"name":"Nie, Hongyun","givenName":"Hongyun","familyName":"Nie","affiliation":[],"nameIdentifiers":[]},{"name":"Cao, Wen","givenName":"Wen","familyName":"Cao","affiliation":[],"nameIdentifiers":[]},{"name":"Wang, Xiaodou","givenName":"Xiaodou","familyName":"Wang","affiliation":[],"nameIdentifiers":[]},{"name":"Guo, Yutao","givenName":"Yutao","familyName":"Guo","affiliation":[],"nameIdentifiers":[]},{"name":"Tian, Xiaoting","givenName":"Xiaoting","familyName":"Tian","affiliation":[],"nameIdentifiers":[]},{"name":"Yin, Xihou","givenName":"Xihou","familyName":"Yin","affiliation":[],"nameIdentifiers":[]},{"name":"Wang, Yan","givenName":"Yan","familyName":"Wang","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Phenanthrene Metabolites from a New Polycyclic Aromatic Hydrocarbon-Degrading Bacterium \u003ci\u003eAeromonas salmonicida\u003c/i\u003e subsp. \u003ci\u003eAchromogenes\u003c/i\u003e Strain NY4"}],"publisher":"Taylor \u0026 Francis","container":{},"publicationYear":2015,"subjects":[{"subject":"Biochemistry"},{"subject":"Space Science"},{"subject":"Microbiology"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Genetics"},{"subject":"Molecular Biology"},{"subject":"Biotechnology"},{"subject":"Environmental Sciences not elsewhere classified"},{"subject":"Chemical Sciences not elsewhere classified"},{"subject":"Ecology"},{"subject":"Immunology"},{"subject":"FOS: Clinical medicine","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Biological Sciences not elsewhere classified"},{"subject":"Science Policy"},{"subject":"Infectious Diseases"},{"subject":"FOS: Health sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Computational Biology"}],"contributors":[],"dates":[{"date":"2015-12-05","dateType":"Created"},{"date":"2019-08-19","dateType":"Updated"},{"date":"2015","dateType":"Issued"}],"language":null,"types":{"ris":"GEN","bibtex":"misc","citeproc":"article","schemaOrg":"Collection","resourceType":"Collection","resourceTypeGeneral":"Collection"},"relatedIdentifiers":[],"relatedItems":[],"sizes":[],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"A new polycyclic aromatic hydrocarbon (PAH)-degrading Gram-negative bacterium \u003ci\u003eAeromonas salmonicida\u003c/i\u003e subsp. \u003ci\u003eachromogenes\u003c/i\u003e strain NY4 was isolated from coking wastewater sludge. Strain NY4 could not grow on1-hydroxy-2-naphthoic acid, hexadecane or hexanol as sole carbon source but phenanthrene. This strain was able to utilize several known microbial metabolites of PAHs, including catechol, protocatechuic acid, salicylic acid, and phenol as sole carbon source. The mixture of the acidic and neutral fraction, acidic fraction alone and neutral fraction alone of phenanthrene metabolites were prepared and analyzed by GC-MS. A total of at least 27 metabolites were identified as the degradation products of phenanthrene by strain NY4. Among them, 1-hydroxy-α-oxo-2-naphthaleneacetic acid, 2-hydroxy-α-oxo-1-naphthaleneacetic acid, 2-hydroxy-1-(1-hydroxy-2-naphthalenyl)-ethanone, 1,2-dihydro naphtha [2,1-b] furan-2-ol and 2,3-dihydro naphtha [1,2-b] furan-2-ol have not been reported as the metabolites of phenanthrenes so far. The accumulation patterns of phenanthrene metabolite accumulation by strain NY4 depended on the incubation time, inoculum size and concentration of phenanthrene. Based on the degradation metabolites of phenanthrene by strain NY4, degradation pathways are proposed. This is the first report of PAH degradation in \u003ci\u003eAeromonas salmonicida\u003c/i\u003e, which lay the foundation for recognition and further characterization of PAH degradation metabolites and pathways in \u003ci\u003eAeromonas salmonicida\u003c/i\u003e strains.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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