{"data":{"id":"10.6084/m9.figshare.920211","type":"dois","attributes":{"doi":"10.6084/m9.figshare.920211","prefix":"10.6084","suffix":"m9.figshare.920211","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Kembel, Steven","nameType":"Personal","givenName":"Steven","familyName":"Kembel","affiliation":[],"nameIdentifiers":[{"schemeUri":"https://orcid.org","nameIdentifier":"https://orcid.org/0000-0001-5224-0952","nameIdentifierScheme":"ORCID"}]}],"titles":[{"title":"Bacterial genomic 16S gene copy number and sequences"}],"publisher":"figshare","container":{},"publicationYear":2014,"subjects":[{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Microbiology"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2014-01-31","dateType":"Created"},{"date":"2014-01-31","dateType":"Updated"},{"date":"2014","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["653824 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"This data set includes estimates of genomic copy number of the 16S rRNA gene and corresponding 16S gene sequences for 484 bacterial taxa, as described in the paper: Kembel SW, Wu M, Eisen JA, Green JL (2012) Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance. PLoS Comput Biol 8(10): e1002743. doi:10.1371/journal.pcbi.1002743 http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002743 Two files are included: \u003cstrong\u003ereftaxa.16S.copynumber.csv\u003c/strong\u003e: estimated number of copies of the 16S gene in the genome of the taxon (see article for description of methodology) \u003cstrong\u003ereftaxa.16S.alignment.fasta\u003c/strong\u003e: 16S sequence for each taxon aligned to the GreenGenes core set using PyNAST For each file, the reference taxa identifiers consist of a code of the format \"t511693-Escherichia\", where \u003cem\u003e511693\u003c/em\u003e represents the NCBI taxonomic identifier of the taxon and \u003cem\u003eEscherichia\u003c/em\u003e represents the taxonomic genus identity of the 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