{"data":{"id":"10.6084/m9.figshare.902838","type":"dois","attributes":{"doi":"10.6084/m9.figshare.902838","prefix":"10.6084","suffix":"m9.figshare.902838","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Ghosh, Soma","nameType":"Personal","givenName":"Soma","familyName":"Ghosh","affiliation":[],"nameIdentifiers":[]},{"name":"Saraswathi Vishveshwara","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Native and non-native structures used to generate Protein Structure Networks"}],"publisher":"f1000research.com","container":{},"publicationYear":2014,"subjects":[{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2014-01-17","dateType":"Created"},{"date":"2014-01-21","dateType":"Updated"},{"date":"2014","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.12688/f1000research.3-17.v1","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["734685 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"Dataset 1: List of 5422 native protein structures\u003cbr\u003eThe positive dataset (PSN-QA_positive) used in this study consisted of 5422 native protein structures, that were downloaded using PISCES. Three letter codes of the PDBs are provided. Dataset 2: Details of the decoy dataset.\u003cbr\u003eThe negative dataset (PSN-QA_negative) used in this study were obtained from various publicly available resources. Dataset 3: Data used to generate Figure 1 in the associated article. This file contains the value of SLClu (size of the largest cluster) for example protein structures at different Imin values (interaction strength cutoffs). Dataset 4: Data used to generate Figure 2 in the associated article. The file contains the rank values obtained by the native and the decoy datasets. Please note that we have not kept a track of the correspondence between the Id and PDB Ids.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://f1000.figshare.com/articles/dataset/Native_and_non_native_structures_used_to_generate_Protein_Structure_Networks/902838","contentUrl":null,"metadataVersion":3,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2014-01-21T15:32:59.000Z","registered":"2014-01-21T15:33:00.000Z","published":"2014","updated":"2020-09-05T00:38:09.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.902838","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}}}