{"data":{"id":"10.6084/m9.figshare.7867544","type":"dois","attributes":{"doi":"10.6084/m9.figshare.7867544","prefix":"10.6084","suffix":"m9.figshare.7867544","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Jinbo Guo","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"ThzLecRLK.xlsx"}],"publisher":"figshare","container":{},"publicationYear":2019,"subjects":[{"subject":"70599 Forestry Sciences not elsewhere classified","subjectScheme":"FOR"},{"subject":"FOS: Agriculture, forestry and fisheries","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Agriculture, forestry and fisheries","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2019-03-20","dateType":"Created"},{"date":"2019-03-20","dateType":"Updated"},{"date":"2019","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["298975 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"The CDS sequences of the 297 ThzLecRLK genes identified by bioinformatics methods. The unigene sequences of T. hybrid 'Zhongshanshan' were derived from the previously determined salinity stress transcriptome,short-term waterlogging transcriptome and adventitious roots transcriptome. Hidden Markov Model (HMM) profiles (PF00069, PF01453, PF00139, PF00059), which correspond to kinase, G-type lectin, L-type lectin and C-type lectin domains, respectively, were downloaded from Pfam (http://pfam.xfam.org/). We retrieved genes containing a kinase domain by running the hmmsearch program (HMMER 2.3.2) to search the kinase profile (PF00069) against the proteomic sequences. Within this set of hypothetical kinase proteins, we searched for G-type lectin, L-type lectin and C-type lectin HMM profiles (PF01453, PF00139, PF00059) (E value cut-off \u0026lt; 1). Sequences in which we identified a protein kinase domain (PF00069), along with either a G-type lectin (PF01453), an L-type lectin (PF00139), or a C-type lectin domain (PF00059) were considered putative LecRLKs (GmLecRLKs) and finally confirmed as ThzLecRLK genes after removing redundant sequences with 97% similarity between different database.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/ThzLecRLK_xlsx/7867544","contentUrl":null,"metadataVersion":1,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2019-03-20T07:51:11.000Z","registered":"2019-03-20T07:51:12.000Z","published":"2019","updated":"2020-08-27T15:37:14.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.7867544","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}}}