{"data":{"id":"10.6084/m9.figshare.770903","type":"dois","attributes":{"doi":"10.6084/m9.figshare.770903","prefix":"10.6084","suffix":"m9.figshare.770903","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Wilbanks, Elizabeth","nameType":"Personal","givenName":"Elizabeth","familyName":"Wilbanks","affiliation":[],"nameIdentifiers":[]},{"name":"Jaekel, Ulrike","nameType":"Personal","givenName":"Ulrike","familyName":"Jaekel","affiliation":[],"nameIdentifiers":[]},{"name":"Salman, Verena","nameType":"Personal","givenName":"Verena","familyName":"Salman","affiliation":[],"nameIdentifiers":[]},{"name":"Parris Humphrey","affiliation":[],"nameIdentifiers":[]},{"name":"Eisen, Jonathan","nameType":"Personal","givenName":"Jonathan","familyName":"Eisen","affiliation":[],"nameIdentifiers":[{"schemeUri":"https://orcid.org","nameIdentifier":"https://orcid.org/0000-0002-0159-2197","nameIdentifierScheme":"ORCID"}]},{"name":"Facciotti, Marc","nameType":"Personal","givenName":"Marc","familyName":"Facciotti","affiliation":[],"nameIdentifiers":[]},{"name":"Buckley, Daniel","nameType":"Personal","givenName":"Daniel","familyName":"Buckley","affiliation":[],"nameIdentifiers":[]},{"name":"Zinder, Stephen","nameType":"Personal","givenName":"Stephen","familyName":"Zinder","affiliation":[],"nameIdentifiers":[]},{"name":"Druschel, Gregory","nameType":"Personal","givenName":"Gregory","familyName":"Druschel","affiliation":[],"nameIdentifiers":[]},{"name":"Fike, David","nameType":"Personal","givenName":"David","familyName":"Fike","affiliation":[],"nameIdentifiers":[]},{"name":"Orphan, Victoria","nameType":"Personal","givenName":"Victoria","familyName":"Orphan","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Draft genomes from uncultured Thiohalocapsa sp. PB-PSB1 and uncultured Desulfofustis sp. PB-SRB1 from the study \"Microscale sulfur cycling in the pink berry consortia of the Sippewissett salt marsh\""}],"publisher":"figshare","container":{},"publicationYear":2013,"subjects":[{"subject":"Geochemistry"},{"subject":"FOS: Earth and related environmental sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Earth and related environmental sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Ecology"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Microbiology"}],"contributors":[],"dates":[{"date":"2013-08-13","dateType":"Created"},{"date":"2014-05-27","dateType":"Updated"},{"date":"2013","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["53589312 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"The pink berries are macroscopic, photosynthetic microbial aggregates composed primarily of two closely associated species: sulfide-oxidizing purple sulfur bacteria (uncultured Thiohalocapsa sp. PB-PSB1) of the family Chromatiaceae and sulfate reducing bacteria (uncultured Desulfofustis sp. PB-SRB1) from the Desulfobulbacaea. This dataset consists of the near-complete draft genomes for these two bacterial species. Annotations provieded here were generated by RAST. These genomes were obtained by binning assembled metagenomic data associated with ncbi bioproject: PRJNA214436. Genomes annotation data presented here was generated by the RAST automated annotation pipeline with frame-shift correction (http://rast.nmpdr.org). Full description of the methods used to generate this data and analysis of these genomes has been provided in the publication \"A sulfurous symbiosis: microscale sulfur cycling in the pink berry consortia of the Sippewissett salt marsh\" (Wilbanks, et al. in preparation).","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/dataset/Draft_genomes_from_uncultured_Thiohalocapsa_sp_PB_PSB1_and_uncultured_Desulfofustis_sp_PB_SRB1_from_the_study_Microscale_sulfur_cycling_in_the_pink_berry_consortia_of_the_Sippewissett_salt_marsh_/770903","contentUrl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