{"data":{"id":"10.6084/m9.figshare.749728","type":"dois","attributes":{"doi":"10.6084/m9.figshare.749728","prefix":"10.6084","suffix":"m9.figshare.749728","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Gavery, Mackenzie","nameType":"Personal","givenName":"Mackenzie","familyName":"Gavery","affiliation":[],"nameIdentifiers":[]},{"name":"Roberts, Steven","nameType":"Personal","givenName":"Steven","familyName":"Roberts","affiliation":[],"nameIdentifiers":[{"schemeUri":"https://orcid.org","nameIdentifier":"https://orcid.org/0000-0001-8302-1138","nameIdentifierScheme":"ORCID"}]}],"titles":[{"title":"Crassostrea gigas high-throughput bisulfite sequencing (gill tissue)"}],"publisher":"figshare","container":{},"publicationYear":2013,"subjects":[{"subject":"Physiology"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Marine Biology"},{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Genetics"},{"subject":"Molecular Biology"}],"contributors":[],"dates":[{"date":"2013-07-22","dateType":"Created"},{"date":"2015-12-02","dateType":"Updated"},{"date":"2013","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["96641453 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"This fileset contains genomic feature tracks from methylation-enriched high-throughput bisulfite sequencing and RNA-seq analysis for Pacific oyster (\u003cem\u003eCrassostrea gigas\u003c/em\u003e) gill tissue. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the \u003cem\u003eC. gigas\u003c/em\u003e genome (Fang et al. 2012). All data and instructions are also available at http://oystergen.es/bigill. File descriptions: \u003cem\u003eBiGill_CpG_methylation.igv\u003c/em\u003e - Location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. \u003cem\u003eBiGill_exon_clc_rpkm.igv\u003c/em\u003e - Exon-specific gene expression values (RPKM) from RNA-seq analysis. \u003cem\u003eBiGill_igv_charlie.xml\u003c/em\u003e - A session file, which loads methylation and RNA-seq feature tracks as well as the location of C.gigas genome features. \u003cem\u003eQuery to derive_CG_AllData_IGV.txt\u003c/em\u003e - Query (SQLShare) used to derive the methylation feature track from the original methratio output (http://goo.gl/5LGq9Q) Reference: Fang X, Li L, Luo R, Xu F, Wang X, Zhu Y, Yang L, Huang Z. 2012. Genomic data from the Pacific oyster (\u003cem\u003eCrassostrea gigas\u003c/em\u003e). GigaScience. http://dx.doi.org/10.5524/100030.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/dataset/Crassostrea_gigas_high_throughput_bisulfite_sequencing_gill_tissue_/749728","contentUrl":null,"metadataVersion":2,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2013-09-20T19:20:39.000Z","registered":"2013-09-20T19:20:40.000Z","published":"2013","updated":"2020-09-05T01:43:59.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.749728","type":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