{"data":{"id":"10.6084/m9.figshare.7019843","type":"dois","attributes":{"doi":"10.6084/m9.figshare.7019843","prefix":"10.6084","suffix":"m9.figshare.7019843","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Moolhuijzen, Paula","nameType":"Personal","givenName":"Paula","familyName":"Moolhuijzen","affiliation":[],"nameIdentifiers":[]},{"name":"Pao Theen See","affiliation":[],"nameIdentifiers":[]},{"name":"Moffat, Caroline S.","nameType":"Personal","givenName":"Caroline S.","familyName":"Moffat","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Dataset containing Pyrenophora tritici-repentis (isolate M4) RNA-seq analysis of in vitro samples and in planta samples during wheat tan spot infection"}],"publisher":"figshare","container":{},"publicationYear":2018,"subjects":[{"subject":"70308 Crop and Pasture Protection (Pests, Diseases and Weeds)","subjectScheme":"FOR"},{"subject":"FOS: Agriculture, forestry and fisheries","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Agriculture, forestry and fisheries","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Pathogenesis"},{"subject":"Genetics"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Pathology"}],"contributors":[],"dates":[{"date":"2018-08-29","dateType":"Created"},{"date":"2019-03-26","dateType":"Updated"},{"date":"2018","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.1186/s13104-018-3993-2","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["9948479 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"This dataset consists of four Excel spreadsheet files in \u003cb\u003e.xlsx\u003c/b\u003e format and a supplementary file including methodology in \u003cb\u003e.docx\u003c/b\u003e format. The data were generated as part of a study which used RNA sequencing to generate transcriptional datasets for wheat (Triticum aestivum) and the pathogen Pyrenophora tritici-repentis (a causal agent of tan spot) during the infection and in vitro pathogen growth stages.\u003cbr\u003eThe data consists of the following files:\u003cbr\u003e\u003cb\u003eData file 1.xlsx: \u003c/b\u003eTable of RNA sample collections and statistics for both Triticum aestivum and Pyrenophora tritici-repentis. Four sample IDs for each are provided, with Source Tissue, Condition, Sample (Days Post Leaf-Inoculation), Read Pair, Reference, Read pair alignment, Percent read pair alignment and Genes for each sample.\u003cbr\u003e\u003cb\u003eData file 2.xlsx: \u003c/b\u003eWheat gene expression 3 and 4 days post infection, with variables Gene ID, Locus, Status, Control (FPKM), Infection (FPKM) and log2(fold_change).\u003cbr\u003e\u003cb\u003eData file 3.xlsx:\u003c/b\u003e Pyrenophora tritici-repentis gene expression in planta at days 3 and 4 post infection. 9093 GenBank accession numbers are included with variables Genome position in planta 3 days post infection (FPKM), in planta 4 days post infection (FPKM), log2 (fold change), M4 Gene description and Effectorp probability. The full dataset including 13770 accession numbers with P-values and significance is included in the second tab of the spreadsheet.\u003cbr\u003e\u003cb\u003eData file 4.xlsx: \u003c/b\u003ePyrenophora tritici-repentis (isolate M4) gene expression in vitro of vegetative and sporulating mycelia. 10630 accession codes are included with variables Genome position, Vegetative mycelium (FPKM), Sporulating mycelium (FPKM), log2 (fold change), Gene Description and Effectorp probability. The second tab of the spreadsheet includes the P- and Q-values and significance.\u003cbr\u003e\u003cb\u003eSupplementary file 1.docx: \u003c/b\u003eThis document contains the material, methods and references which relate to the study.\u003cbr\u003eThe .\u003cb\u003exlsx \u003c/b\u003efiles can be opened using Microsoft Excel, Google Sheets or other open spreadsheet software. The .\u003cb\u003edocx \u003c/b\u003efile can be opened using Microsoft Word or open word processing software.\u003cbr\u003e\u003cbr\u003e\u003cbr\u003e\u003cbr\u003e\u003cbr\u003e\u003cbr\u003e","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://springernature.figshare.com/articles/Dataset_containing_Pyrenophora_tritici-repentis_isolate_M4_RNA-seq_analysis_of_in_vitro_samples_and_in_planta_samples_during_wheat_tan_spot_infection/7019843","contentUrl":null,"metadataVersion":3,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":1,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2018-08-29T09:50:21.000Z","registered":"2018-08-29T09:51:22.000Z","published":"2018","updated":"2020-08-28T12:23:41.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.7019843","type":"media"}},"references":{"data":[{"id":"10.1186/s13104-018-3993-2","type":"dois"}]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}}}