{"data":{"id":"10.6084/m9.figshare.7010492.v1","type":"dois","attributes":{"doi":"10.6084/m9.figshare.7010492.v1","prefix":"10.6084","suffix":"m9.figshare.7010492.v1","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Lin, Ya-Ping","nameType":"Personal","givenName":"Ya-Ping","familyName":"Lin","affiliation":[],"nameIdentifiers":[]},{"name":"Chu-Yin Liu","affiliation":[],"nameIdentifiers":[]},{"name":"Kai-Yi Chen","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Supplemental tables for \"Assessment of population differentiation and linkage disequilibrium in Solanum pimpinellifolium using genome-wide high-density SNP markers\""}],"publisher":"figshare","container":{},"publicationYear":2018,"subjects":[{"subject":"70602 Horticultural Crop Improvement (Selection and Breeding)","subjectScheme":"FOR"},{"subject":"FOS: Agriculture, forestry and fisheries","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Agriculture, forestry and fisheries","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Genetics"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2018-08-25","dateType":"Created"},{"date":"2018-08-25","dateType":"Updated"},{"date":"2018","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[{"relationType":"IsPreviousVersionOf","relatedIdentifier":"10.6084/m9.figshare.7010492","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["14276657 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"\u003cb\u003eTable S1. The detail information of each accession. \u003c/b\u003e This table lists the RAD sequencing summary, mating type and collection location of the 99 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e in this study. The RAD sequencing summary includes the reads, the missing proportion and the heterozygous proportion. FSC and ASC indicate facultative self-compatible and autogamous self-compatible mating type, respectively.\u003cbr\u003e \u003cb\u003eTable S2. The expected sites and sequenced sites of \u003ci\u003ePst\u003c/i\u003eI as well as the sites with SNP. \u003c/b\u003e This table contains the numbers of expected cutting sites and the actually sequenced sites of \u003ci\u003ePst\u003c/i\u003eI of each chromosome in this study. The sequenced sites are also checked if they contained any SNP. The number of expected genes in the expected sequencing regions is listed to reveal the capability of capturing genes in this RAD sequencing strategy.\u003cbr\u003e \u003cb\u003eTable S3. The information of 24,330 SNPs. \u003c/b\u003e We list all the genotypes of the 98 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e. Each row indicates a single SNP and each column indicates an individual.\u003cbr\u003e \u003cb\u003eTable S4. The list of InDel markers. \u003c/b\u003eThe putative InDel markers are summarized in this table, including the physical positions, reference alleles and Insertion/Deletion alleles.\u003cbr\u003e \u003cb\u003eTable S5. The list of SSR markers. \u003c/b\u003eThe putative SSR markers are summarized in this table. The SSR markers were obtained from the InDel markers if the InDels show tandem repeat units. The physical positions, repeat units and the InDel length are listed.\u003cbr\u003e \u003cb\u003eTable S6. Pair-wise F\u003csub\u003est\u003c/sub\u003e of subpopulations. \u003c/b\u003eThis table is the pair-wise F\u003csub\u003est\u003c/sub\u003e result of seven subpopulations of 98 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e. The blue, red and green groups are the three pure ancestries in ADMIXTURE result. The blue-green, red-blue and red-green groups are the admixture groups of pair ancestries. Three-mixture indicates the group contains the three ancestries.\u003cbr\u003e \u003cb\u003eTable S7. The genotypes of 4,326 SNPs of 214 samples. \u003c/b\u003eThis table contains the bi-allelic genotypes of SolCAP array of 214 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e in the three previous studies (Sim et al., 2012; Blanca et al., 2012; Blanca et al., 2015). The ID was labelled by the accession and its original study. Each row indicates a single SNP and each column indicates an individual.\u003cbr\u003e \u003cb\u003eTable S8. The identity of 4,326 SNPs within accessions. \u003c/b\u003eFor the 214 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e, we listed all the accessions whose sample size is more than one individual and checked the number of monomorphic SNP. The identity is the percentage of monomorphic SNP within the same accession excluding missing values.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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