{"data":{"id":"10.6084/m9.figshare.7010492","type":"dois","attributes":{"doi":"10.6084/m9.figshare.7010492","prefix":"10.6084","suffix":"m9.figshare.7010492","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Lin, Ya-Ping","nameType":"Personal","givenName":"Ya-Ping","familyName":"Lin","affiliation":[],"nameIdentifiers":[]},{"name":"Chu-Yin Liu","affiliation":[],"nameIdentifiers":[]},{"name":"Kai-Yi Chen","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Supplemental tables for \"Assessment of genetic differentiation and linkage disequilibrium in Solanum pimpinellifolium using genome-wide high-density SNP markers\""}],"publisher":"figshare","container":{},"publicationYear":2019,"subjects":[{"subject":"70602 Horticultural Crop Improvement (Selection and Breeding)","subjectScheme":"FOR"},{"subject":"FOS: Agriculture, forestry and fisheries","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Agriculture, forestry and fisheries","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Genetics"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2018-08-25","dateType":"Created"},{"date":"2019-02-17","dateType":"Updated"},{"date":"2019","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["12636541 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"\u003cb\u003eTable S1. The detail information of each accession. \u003c/b\u003eThis table lists the RAD sequencing summary, mating type and collection location of the 99 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e in this study. The RAD sequencing summary includes the reads, the missing proportion and the heterozygous proportion. FSC and ASC indicate facultative self-compatible and autogamous self-compatible mating type, respectively. \u003cb\u003eTable S2. The statistical summaries of expected sites and sequenced sites of \u003ci\u003ePst\u003c/i\u003eI, the sites targeted by SNP and the sequenced genes. \u003c/b\u003eThis table contains the numbers of expected cutting sites and the actually sequenced sites of \u003ci\u003ePst\u003c/i\u003eI of each chromosome in this study. The sequenced sites are also checked if they contained any SNP. The number of expected genes in the expected sequencing regions is summarized to reveal the capability of capturing genes in this RAD sequencing strategy. Also, the sequenced genes are summarized.\u003cbr\u003e \u003cb\u003eTable S3. The information of 24,330 SNPs. \u003c/b\u003eWe list all the genotypes of the 98 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e. Each row indicates a SNP and each column indicates an individual. \u003cb\u003eTable S4. Pairwise F\u003csub\u003est \u003c/sub\u003eof seven subpopulations. \u003c/b\u003eThis table is the pairwise F\u003csub\u003est\u003c/sub\u003e of seven subpopulations for 98 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e. The names of subpopulations are stated in Table 2. \u003cb\u003eTable S5. The locations and genotypes of 214 samples of SolCAP genotyping array. \u003c/b\u003eThis table contains the 2,307 consistent allele calling markers of SolCAP array for 214 samples in the three previous studies (Blanca \u003ci\u003eet al.\u003c/i\u003e 2012, 2015; Sim \u003ci\u003eet al.\u003c/i\u003e 2012a). The gathering locations are also provided. \u003cb\u003eTable S6. The removed 627 SNPs with reverse-complement allele designation. \u003c/b\u003eThis list includes the SNPs we removed in SolCAP meta-analysis due to reverse-complement allele designation \u003cb\u003eTable S7. The identity of 2,307 SNP markers within accessions. \u003c/b\u003eFor the 214 \u003ci\u003eS. pimpinellifolium\u003c/i\u003e, we listed all the accessions that contain more than one individual to count monomorphic SNP. The identity is the percentage of monomorphic SNP for the same accession excluding missing values.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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