{"data":{"id":"10.6084/m9.figshare.655976","type":"dois","attributes":{"doi":"10.6084/m9.figshare.655976","prefix":"10.6084","suffix":"m9.figshare.655976","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Gregg, Jake","nameType":"Personal","givenName":"Jake","familyName":"Gregg","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Ichthyophonus de novo (Fish 546)"}],"publisher":"figshare","container":{},"publicationYear":2013,"subjects":[{"subject":"Marine Biology"},{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Ecology"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"110309 Infectious Diseases","subjectScheme":"FOR"},{"subject":"FOS: Health sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Health sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2013-03-20","dateType":"Created"},{"date":"2013-03-20","dateType":"Updated"},{"date":"2013","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["266294371 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"This record includes files that resulted from \u003cem\u003ede novo\u003c/em\u003e assembly of short read (Illumina PE100) genomic data from the parasite\u003cem\u003e Ichthyophonus\u003c/em\u003e. I would like to acknowledge K. Nichols for supplying the data for this analysis. Files included in this data set: \u003cstrong\u003eIchthlyophonus de novo (Fish546).pdf; \u003c/strong\u003ePresentation giving overview of project and summary results. \u003cstrong\u003eAssemblyParameters.pdf; \u003c/strong\u003eSoftware settings for CLC and SOAPdenovo assemblers. \u003cstrong\u003e11186ContigSummary.csv; \u003c/strong\u003eTablular data for contig length and coverage from CLC assembly. \u003cstrong\u003eSoapContigSummary.csv; \u003c/strong\u003eTabular data for contig length and coverage from SOAPdenovo assembly. \u003cstrong\u003eCLC_Choanoflagellate_Blast_GO_Annot...csv; \u003c/strong\u003eBlast results from annotated Choanoflagellate genome query on \u003cem\u003eIchthyophonus\u003c/em\u003e contig database from CLC. File is a merger of blast results and annotation table. \u003cstrong\u003eCLC_Fungi_Blast_GO_Annotations.csv; \u003c/strong\u003eBlast results from annotated Fungal genome query on \u003cem\u003eIchthyophonus\u003c/em\u003e contig database from CLC. File is a merger of blast results and annotation table. \u003cstrong\u003eCLC_Metazoa_Blast_GO_Annotations.csv; \u003c/strong\u003eBlast results from annotated Metazoan genome query on \u003cem\u003eIchthyophonus\u003c/em\u003e contig database from CLC. File is a merger of blast results and annotation table. \u003cstrong\u003eSOAP_Choanoflagellate_Blast_GO_Anno...csv; \u003c/strong\u003eBlast results from annotated Choanoflagellate genome query on \u003cem\u003eIchthyophonus\u003c/em\u003e contig database from SOAP. File is a merger of blast results and annotation table. \u003cstrong\u003eSOAP_Fungi_Blast_GO_Annotations.csv; \u003c/strong\u003eBlast results from annotated Fungal genome query on \u003cem\u003eIchthyophonus\u003c/em\u003e contig database from SOAP. File is a merger of blast results and annotation table. \u003cstrong\u003eSOAP_Metazoan_Blast_GO_Annotations.csv; \u003c/strong\u003eBlast results from annotated Metazoan genome query on \u003cem\u003eIchthyophonus\u003c/em\u003e contig database from SOAP. File is a merger of blast results and annotation table. \u003cstrong\u003eCLC_OpenReadingFrames.bed\u003c/strong\u003e\u003cstrong\u003e;\u003c/strong\u003e Bed file with putative Open Reading Frames from the CLC assembly, produced by EMBOSS \"getorf\" funcion, implemented in Galaxy. \u003cstrong\u003eSNP_RestrictionBed.bed;\u003c/strong\u003e Bed file with putative SNP sites, produce by converting .gff SNP file from CLC assembly. \u003cstrong\u003eChoanoflagellate_Blast.bed;\u003c/strong\u003e Bed file of Choanoflagellate blast hits, converted from CLC blast output file above. \u003cstrong\u003eFungi_Blast.bed;\u003c/strong\u003e Bed file of Fungal blast hits, converted from CLC blast output above. \u003cstrong\u003eMetazoa_Blast.bed; \u003c/strong\u003eBed file of Metazoan blast hits, converted from CLC blast output above. \u003cstrong\u003eigv_snapshot.png; \u003c/strong\u003eExample of blast hits, SNPs and restriction enzyme sites displayed in Integrated Genomic 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