{"data":{"id":"10.6084/m9.figshare.24763769","type":"dois","attributes":{"doi":"10.6084/m9.figshare.24763769","prefix":"10.6084","suffix":"m9.figshare.24763769","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Dong, Limei","givenName":"Limei","familyName":"Dong","affiliation":[],"nameIdentifiers":[]},{"name":"Manghwar, Hakim","givenName":"Hakim","familyName":"Manghwar","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Genome-wide expression analysis of \u003ci\u003eLBD\u003c/i\u003e genes in tomato (\u003ci\u003eSolanum lycopersicum\u003c/i\u003e L.) under different light conditions"}],"publisher":"Taylor \u0026 Francis","container":{},"publicationYear":2023,"subjects":[{"subject":"Genetics"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Environmental Sciences not elsewhere classified"},{"subject":"Chemical Sciences not elsewhere classified"},{"subject":"Ecology"},{"subject":"Biological Sciences not elsewhere classified"},{"subject":"Marine Biology"},{"subject":"Plant Biology"}],"contributors":[],"dates":[{"date":"2023-12-07","dateType":"Created"},{"date":"2024-03-21","dateType":"Updated"},{"date":"2023","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.1080/15592324.2023.2290414","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["5560652 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"Lateral organ boundaries (LOB) domain (\u003ci\u003eLBD\u003c/i\u003e) genes, a gene family that encodes the transcription factors (TFs) of plants, plays crucial functions in the development and growth of plants. Currently, genome-wide studies of the \u003ci\u003eLBD\u003c/i\u003e family are still limited to tomato (\u003ci\u003eSolanum lycopersicum\u003c/i\u003e L.), which is considered an important economic crop. In this study, we performed a genome-wide analysis of \u003ci\u003eLBD\u003c/i\u003e in tomato. In total, 56 \u003ci\u003eLBDs\u003c/i\u003e were found in the tomato genome. Protein alignment and phylogenetic classification showed that \u003ci\u003eLBDs\u003c/i\u003e were conserved with other species. Since light emitting diodes (LEDs) light have promising applications for tomato growth. To better understand the potential function of \u003ci\u003eLBDs\u003c/i\u003e in response to LED light in tomato, we conducted a genome-wide expression analysis of \u003ci\u003eLBD\u003c/i\u003e genes under different light conditions. As expected, different LED lights affected the tomato growth (e.g. hypocotyl length). RNA-seq data showed that eight \u003ci\u003eLBDs\u003c/i\u003e in tomato seedlings were differentially expressed under different light treatments, including white, blue, red, and far-red light, compared to the dark-grown condition. It indicates that these \u003ci\u003eLBDs\u003c/i\u003e might regulate plant development in different LED light conditions. Interestingly, two \u003ci\u003eLBD\u003c/i\u003e genes (\u003ci\u003eSlLBD1\u003c/i\u003e and \u003ci\u003eSlLBD2\u003c/i\u003e) were found to be differentially expressed in four distinct lights, which might be involved in regulating the plant architecture via a complicated TF network, which can be taken into consideration in further investigation.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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