{"data":{"id":"10.6084/m9.figshare.22586066","type":"dois","attributes":{"doi":"10.6084/m9.figshare.22586066","prefix":"10.6084","suffix":"m9.figshare.22586066","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Wu, Yuan-Mi","givenName":"Yuan-Mi","familyName":"Wu","affiliation":["Beijing Forestry University"],"nameIdentifiers":[]},{"name":"Mu, Xian-Yun","givenName":"Xian-Yun","familyName":"Mu","affiliation":["Beijing Forestry University"],"nameIdentifiers":[]},{"name":"Qin, Yong-Hua","givenName":"Yong-Hua","familyName":"Qin","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"The first complete chloroplast genome in \u003ci\u003eEngelhardia sensu stricto\u003c/i\u003e, \u003ci\u003eEngelhardia hainanensis\u003c/i\u003e Chen: genome characterization and its phylogenetic relationships within the family Juglandaceae"}],"publisher":"Taylor \u0026 Francis","container":{},"publicationYear":2023,"subjects":[{"subject":"Microbiology"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Genetics"},{"subject":"Evolutionary Biology"},{"subject":"59999 Environmental Sciences not elsewhere classified","schemeUri":"http://www.abs.gov.au/ausstats/abs@.nsf/0/6BB427AB9696C225CA2574180004463E","subjectScheme":"FOR"},{"subject":"FOS: Earth and related environmental sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Ecology"},{"subject":"69999 Biological Sciences not elsewhere classified","schemeUri":"http://www.abs.gov.au/ausstats/abs@.nsf/0/6BB427AB9696C225CA2574180004463E","subjectScheme":"FOR"},{"subject":"Plant Biology"}],"contributors":[],"dates":[{"date":"2023-04-11","dateType":"Created"},{"date":"2023-05-02","dateType":"Updated"},{"date":"2023","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.1080/23802359.2023.2196359","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["31292376 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"Trees of \u003ci\u003eEngelhardia\u003c/i\u003e are important components of subtropical and tropical forests in South-eastern Asia with great ecological and economic values. However, phylogenetic relationships within Engelhardioideae (Juglandaceae) remains obscure. In this study, we report the first complete chloroplast genome sequences of \u003ci\u003eEngelhardia sensu stricto\u003c/i\u003e, \u003ci\u003eEngelhardia hainanensis\u003c/i\u003e Chen, a rare species endemic in southern China. Its complete chloroplast genome is 161,574 bp in length, with a typical quadripartite structure that includes a large single-copy region of 91,158 bp, a small single-copy region of 18,790 bp, and its GC content is 35.8%. A total of 128 genes were identified, including 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Furthermore, a phylogenetic tree of Juglandaceae was constructed based the complete chloroplast genome sequence, which strongly support the three-subfamily classification system in Juglandaceae, and \u003ci\u003eE. hainanensis\u003c/i\u003e was resolved sister to two \u003ci\u003eAlfaropsis\u003c/i\u003e species. This study provides valuable genomic information for the species identification and phylogenetic study of Juglandaceae.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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