{"data":{"id":"10.6084/m9.figshare.1491489","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1491489","prefix":"10.6084","suffix":"m9.figshare.1491489","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Belanger, Kenneth D.","nameType":"Personal","givenName":"Kenneth D.","familyName":"Belanger","affiliation":[],"nameIdentifiers":[]},{"name":"Ay, Ahmet","nameType":"Personal","givenName":"Ahmet","familyName":"Ay","affiliation":[],"nameIdentifiers":[]},{"name":"Larson, Nate","nameType":"Personal","givenName":"Nate","familyName":"Larson","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"27_Clusters_excelFile"}],"publisher":"figshare","container":{},"publicationYear":2015,"subjects":[{"subject":"Molecular Biology"},{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2015-07-22","dateType":"Created"},{"date":"2015-07-22","dateType":"Updated"},{"date":"2015","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["239683 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"Clusters formed as part of a study to determine the function of \u003cem\u003ekap108 \u003c/em\u003ein \u003cem\u003eSaccharomyces cerevisiae.\u003c/em\u003e Genes clustered were those that underwent at least a 40% change in differential expression between wild-type and \u003cem\u003ekap108∆\u003c/em\u003e cells following the addition of oxidative stress. Three oxidative time points were considered--10 min oxidative stress, 60 min oxidative stress, and 60 min oxidative stress followed by 60 min no stress--and clustering was done based on how differential gene expression between mutant and wild-type cells changed between time points. A 20% increase was considered \"Up\", a 20% decrease was considered \"Dn\", and everything else was considered \"Nc\". With four time points considered, having three possibilities for each meant 27 possible clusters. This file contains information on all 27 clusters, including the genes within them, graphical depictions of how differential expression changes for each gene over all four time points, a summary of YEASTRACT Gene Ontology analysis for each cluster, and links to full YEASTRACT Gene Ontology analyses.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/dataset/27_Clusters_excelFile/1491489","contentUrl":null,"metadataVersion":1,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2015-07-22T18:50:37.000Z","registered":"2015-07-22T18:50:38.000Z","published":"2015","updated":"2020-09-04T16:27:44.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.1491489","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}}}