{"data":{"id":"10.6084/m9.figshare.1408813","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1408813","prefix":"10.6084","suffix":"m9.figshare.1408813","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Dutheil, Julien","nameType":"Personal","givenName":"Julien","familyName":"Dutheil","affiliation":[],"nameIdentifiers":[{"schemeUri":"https://orcid.org","nameIdentifier":"https://orcid.org/0000-0001-7753-4121","nameIdentifierScheme":"ORCID"}]},{"name":"Munch, Kasper","nameType":"Personal","givenName":"Kasper","familyName":"Munch","affiliation":[],"nameIdentifiers":[]},{"name":"Kiwoong Nam","affiliation":[],"nameIdentifiers":[]},{"name":"Mailund, Thomas","nameType":"Personal","givenName":"Thomas","familyName":"Mailund","affiliation":[],"nameIdentifiers":[]},{"name":"Schierup, Mikkel","nameType":"Personal","givenName":"Mikkel","familyName":"Schierup","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence"}],"publisher":"figshare","container":{},"publicationYear":2015,"subjects":[{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Genetics"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Evolutionary Biology"}],"contributors":[],"dates":[{"date":"2015-05-09","dateType":"Created"},{"date":"2017-01-25","dateType":"Updated"},{"date":"2015","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["5758601 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"* CoalHMM estimates in 1Mb chunks ILS09_gamma_aln_coord_clean_fixscale.csv Estimates for the full genome alignment obtained as described in Nature. 2012 Mar 7;483(7388):169-75. doi: 10.1038/nature10842. * Alignment statistics for the X chromosome chrX.statistics.csv This file has been generated by MafFilter on the the human, chimpanzee, gorilla and orangutan alignment. It contains counts on the various parsimony-informative sites. * ILS in 100 kb windows along the genome alignment. full_scan_100k.csv ILS computed by window scanning along the posterior decoding from the CoalHMM method. * Divergence ratios computed along the X chromosome. Compara.epo_6_primates_hsap-projected.chrXnew.subset.nogap.cleaned_aln.statistics.csv This file was generated by MafFilter on the X chromosome alignment. It contains the divergence estimates between human, chimpanzee, gorilla and orangutan in 100 kb windows. * Nucleotide diversity for the X chromosome in 14 human populations piX_100kb_regions.csv This file was generated from the 1000 Human Genomes Project data. * Genome coordinates of the 8 low-ILS regions PNILSR_1Mb_10pc_edited.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (Asian population)\u003cbr\u003eNeanderthal_ASN.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (European population)\u003cbr\u003eNeanderthal_EUR.csv Coordinates are according to human hg19. * Ampliconic regions\u003cbr\u003eAmpliconicRegions_hg19.csv Ampliconic regions in hg19 coordinates. The two last column describe is the region was included in our genome alignment, and if it was comprised in a low-ILS region.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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