{"data":{"id":"10.6084/m9.figshare.1252043","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1252043","prefix":"10.6084","suffix":"m9.figshare.1252043","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Goldstein, Pavel","nameType":"Personal","givenName":"Pavel","familyName":"Goldstein","affiliation":[],"nameIdentifiers":[]},{"name":"Korol, Abraham B.","nameType":"Personal","givenName":"Abraham B.","familyName":"Korol","affiliation":[],"nameIdentifiers":[]},{"name":"Reiner-Benaim, Anat","nameType":"Personal","givenName":"Anat","familyName":"Reiner-Benaim","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Two-stage genome-wide search for epistasis with implementation to Recombinant Inbred Lines (RIL) populations"}],"publisher":"figshare","container":{},"publicationYear":2014,"subjects":[{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2014-11-26","dateType":"Created"},{"date":"2015-12-02","dateType":"Updated"},{"date":"2014","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["24318060 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"Gene expression data (filter.genes.csv):\u003cbr\u003eGene expression Arabidopsis thaliana data was downloaded from the TAIR database website (ftp://ftp.arabidopsis.org/home/tair/Microarrays/analyzed_data/affy_data_1436_10132005.zip). A sample of 211 RIL population individuals derived from a cross between two inbred accessions, Bayreuth-0 (Bay-0) and Shahdara (Sha), was used. Transcript (mRNA) levels were quantified using Affymetrix whole-genome microarrays with two replications (arrays) for each individual. The gene expression data was preprocessed by the Variance Stabilization Normalization method [31]. Traits with essentially no expression (15,566 traits) were filtered out by the EM algorithm for a mixture of univariate normal distributions (using the ‘mixtools’ R package), leaving 7244 traits for the analysis. Genetic map (genetic_map.csv):\u003cbr\u003eThe Arabidopsis Thaliana genetic map consists of 579 molecular markers. It was originally obtained from http://elp.ucdavis.edu/data/analysis/211_RILs_SFP_map/ 211_RILs_SFP_map.html. The genotypic data was preprocessed using the MultiPoint software (http://www.multiqtl.com) for the purpose of eliminating non-informative overlapping markers and those markers that cause local neighborhood instability in the map [30]. In total, 493 markers remained for the analysis.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/dataset/Genetic_map/1252043","contentUrl":null,"metadataVersion":1,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2014-11-26T07:27:27.000Z","registered":"2014-11-26T07:27:29.000Z","published":"2014","updated":"2020-09-04T20:19:53.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.1252043","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}}}