{"data":{"id":"10.6084/m9.figshare.1247634","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1247634","prefix":"10.6084","suffix":"m9.figshare.1247634","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Smith, Lucas R","nameType":"Personal","givenName":"Lucas R","familyName":"Smith","affiliation":[],"nameIdentifiers":[]},{"name":"Barton, Elisabeth R","nameType":"Personal","givenName":"Elisabeth R","familyName":"Barton","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"SMASH – semi-automatic muscle analysis using segmentation of histology: a MATLAB application"}],"publisher":"figshare","container":{},"publicationYear":2014,"subjects":[{"subject":"Computer Software"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Physiology"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Biological Techniques"}],"contributors":[],"dates":[{"date":"2014-11-20","dateType":"Created"},{"date":"2015-12-02","dateType":"Updated"},{"date":"2014","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["24353294 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"SMASH is composed of a set of functions enabling the user analyze aspects of histological muscle sections. Image segmentation: identifies potential muscle fibers. Fiber filter: removes non fiber elements. Fiber properties computes parameters related to fiber size. Fiber type: determines which fibers are positively stained within an image. Central nucleation: determines which fibers have central nuclei within an image. Object counter: identifies non fiber objects within an image. SMASH Stand Alone requires MATLAB Compiler Runtime (MCR) version R2014a (8.3) which is freely available from Mathworks (http://www.mathworks.com/products/compiler/mcr/). SMASH App requires MATLAB version R2014a (8.3) or later with the Image Processing Toolbox.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/dataset/SMASH_semi_automatic_muscle_analysis_using_segmentation_of_histology_a_MATLAB_application/1247634","contentUrl":null,"metadataVersion":1,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2014-11-20T21:42:29.000Z","registered":"2014-11-20T21:42:31.000Z","published":"2014","updated":"2020-09-04T20:24:16.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.1247634","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}}}