{"data":{"id":"10.6084/m9.figshare.1192659","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1192659","prefix":"10.6084","suffix":"m9.figshare.1192659","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Kaufmann, Stefanie","nameType":"Personal","givenName":"Stefanie","familyName":"Kaufmann","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"SyntenyMapper - 25 species pairs"}],"publisher":"figshare","container":{},"publicationYear":2014,"subjects":[{"subject":"Molecular Biology"},{"subject":"Computational Biology"},{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Genetics"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2014-10-03","dateType":"Created"},{"date":"2014-10-06","dateType":"Updated"},{"date":"2014","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["1001850181 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"This data represents SyntenyMapper results for 25 species pairs, including input data from ENSEMBL Compara, SyntenyMapper output and, for some species, visualization. SyntenyMapper is a tool for highly accurate detection of micro-rearranged regions within macro-rearranged synteny regions. For each species pair, four files are present:\u003cbr\u003especies1-species2-orthologs-v73.filtered: ENSEMBL Compara orthology relationships for protein-coding genes species1-species2-synteny-v73: ENSEMBL Compara synteny regions species1-species2-output_synteny-v73: SyntenyMapper output, refined synteny regions including micro-rearrangements species1-species2-output_mapping-v73: SyntenyMapper output, one-to-one mapping of orthologous genes, including reference to refined synteny regions (optional) species1-species2-visualization.tar: SyntenyMapper visualization of all synteny regions for the species pair, as html files with clickable gene labels and png files. All ENSEMBL data is downloaded from version 73.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/dataset/SyntenyMapper_25_species_pairs/1192659","contentUrl":null,"metadataVersion":1,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2014-10-06T10:09:53.000Z","registered":"2014-10-06T10:09:55.000Z","published":"2014","updated":"2020-09-04T21:11:19.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshare.1192659","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}}}