{"data":{"id":"10.6084/m9.figshare.1158948.v2","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1158948.v2","prefix":"10.6084","suffix":"m9.figshare.1158948.v2","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"M. Qabajah","affiliation":[],"nameIdentifiers":[]},{"name":"E. Awwad","affiliation":[],"nameIdentifiers":[]},{"name":"Y. Ashhab","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Molecular characterisation of \u003ci\u003eEscherichia coli\u003c/i\u003e from dead broiler chickens with signs of colibacillosis and ready-to-market chicken meat in the West Bank"}],"publisher":"Taylor \u0026 Francis","container":{},"publicationYear":2014,"subjects":[{"subject":"60506 Virology","subjectScheme":"FOR"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Biological sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"110309 Infectious Diseases","subjectScheme":"FOR"},{"subject":"FOS: Health sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Health sciences","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Cancer"},{"subject":"Biological Sciences"},{"subject":"Immunology"},{"subject":"FOS: Clinical medicine","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Clinical medicine","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Ecology"},{"subject":"Earth and Environmental Sciences"},{"subject":"Evolutionary Biology"},{"subject":"Biotechnology"},{"subject":"Molecular Biology"},{"subject":"Microbiology"},{"subject":"Medicine"},{"subject":"Engineering"}],"contributors":[],"dates":[{"date":"2014-11-17","dateType":"Created"},{"date":"2016-01-19","dateType":"Updated"},{"date":"2014","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.1080/00071668.2014.935998","relatedIdentifierType":"DOI"},{"relationType":"IsIdenticalTo","relatedIdentifier":"10.6084/m9.figshare.1158948","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["158063 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"1. The aim of this work was to compare a group of virulence-associated characteristics of \u003ci\u003eEscherichia coli\u003c/i\u003e isolates from broiler chickens that had died with signs of colibacillosis against \u003ci\u003eE. coli\u003c/i\u003e isolates from ready-to-market chicken meat in the West Bank.2. The isolates were investigated to determine the virulence factor (VF) profile, phylogenetic group and the presence of extended-spectrum beta-lactamase (ESBL). A total of 66 avian pathogenic \u003ci\u003eE. coli\u003c/i\u003e (APEC) strains from different affected broiler farms and 21 \u003ci\u003eE. coli\u003c/i\u003e isolates from ready-to-market chicken carcasses (hereinafter called meat strains) from 8 slaughter houses were analysed.3. The overall content of VFs was significantly higher (\u003ci\u003eP 0.05) among APEC strains, with over 75% of APEC strains having ≥4 VFs, while over 75% of the meat strains had \u0026lt;4 VFs. The VFs \u003ci\u003eiss, astA\u003c/i\u003e and \u003ci\u003eiucD\u003c/i\u003e were frequently detected in APEC and meat strains, whereas \u003ci\u003ecvi, papC, vat, tsh\u003c/i\u003e and \u003ci\u003eirp2\u003c/i\u003e occurred more significantly in APEC strains. Phylogenetic typing showed that 67% of the meat strains belonged to group B2. Phylogroup D was predominant (50%) in the APEC strains. Using double disc diffusion and polymerase chain reaction (PCR), 10.6% of the APEC and 9.5% of the meat strains were determined to be ESBL positive.\u003c/i\u003e4. Our findings show that the VFs \u003ci\u003epapC, vat, irp2\u003c/i\u003e and to a lesser extent \u003ci\u003etsh\u003c/i\u003e and \u003ci\u003ecvi\u003c/i\u003e are significantly more prevalent in APEC strains. The results demonstrate that chicken meat can be contaminated with APEC strains (≥4 VF). A significant percentage of the meat strains fall in the B2 group, which is a phylogroup largely associated with human pathogenic ExPEC strains. The results of ESBL screening indicated that broiler chicken products in Palestine represent a potential reservoir of ESBL genes and therefore could be considered a possible public health risk.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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