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The raw data were generated by the Marine Microbial Eukaryote Transcriptome Sequencing Project (http://marinemicroeukaryotes.org/). This project provides its own set of assemblies (generated using the Abyss assembler). Since our work-flows are geared towards assemblies generated by the Trinity assembler, raw data were obtained from the following website http://marinemicroeukaryotes.org/ and assembled using Trinity (http://trinityrnaseq.sourceforge.net/) For our purposes the raw data were directly assembled using Trinity (see README for version number) using the default settings. Several species/strains were assembled using all available Illumina libraries combined (see README). The identifiers of the raw data are provided and culture conditions of the organisms can be retrieved from http://marinemicroeukaryotes.org/ using the MMETSP ID (see README for list). \u003cstrong\u003eIf you use these data please cite\u003c/strong\u003e Keeling, P.J. et al., 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. PLoS Biology, 12:e1001889. Grabherr, M.G. et al., 2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology, 29:644-652. \u003cstrong\u003eFunding\u003c/strong\u003e NSF Dimensions of Biodiversity Grant DEB-1046075","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/dataset/Marine_microbial_eukaryote_transcriptomes/1152727","contentUrl":null,"metadataVersion":1,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2014-08-27T17:01:23.000Z","registered":"2014-08-27T17:01:24.000Z","published":"2014","updated":"2020-09-04T21:40:31.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"provider":{"data":{"id":"otjm","type":"providers"}},"media":{"data":{"id":"10.6084/m9.figshar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