{"data":{"id":"10.6084/m9.figshare.1084343","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1084343","prefix":"10.6084","suffix":"m9.figshare.1084343","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Paszkiewicz, Konrad","nameType":"Personal","givenName":"Konrad","familyName":"Paszkiewicz","affiliation":[],"nameIdentifiers":[]},{"name":"Farbos, Audrey","nameType":"Personal","givenName":"Audrey","familyName":"Farbos","affiliation":[],"nameIdentifiers":[]},{"name":"Moore, Karen","nameType":"Personal","givenName":"Karen","familyName":"Moore","affiliation":[],"nameIdentifiers":[]},{"name":"O'Neill, Paul","nameType":"Personal","givenName":"Paul","familyName":"O'Neill","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Three bacterial genomes run on R6 Oxford Nanopore MinIon Chemistry"}],"publisher":"figshare","container":{},"publicationYear":2014,"subjects":[{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"FOS: Computer and information sciences","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2014-06-26","dateType":"Created"},{"date":"2014-06-30","dateType":"Updated"},{"date":"2014","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"relatedItems":[],"sizes":["209992478 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"Creative Commons Attribution 4.0 International","rightsUri":"https://creativecommons.org/licenses/by/4.0/legalcode","schemeUri":"https://spdx.org/licenses/","rightsIdentifier":"cc-by-4.0","rightsIdentifierScheme":"SPDX"}],"descriptions":[{"description":"Three bacterial genomes pooled at equal DNA concentrations and run on R6 Oxford Nanopore Chemistry. Borellia burdorferi B31, Escherichia coli K12 and Streptomyces avermitilis MA 4680. Note that these have been run together as a pool with no barcoding. The Oxford Nanopore reads are contained in the file ninthtranche_renamed.fastq. The remaining FASTA files are the corresponding reference genomes included for convenience. The Lambda Control DNA spike-in sequence is also included. Bioanalyser traces and materials and methods may be found in the attached file. Version 1.91 Meterichor basecaller using 2D option. S.avermitilis 1.8x coverage\u003cbr\u003eB.burgdorferi 18.1x coverage\u003cbr\u003eLambda control spike-in 1,132x coverage\u003cbr\u003eE.coli 4,64kb 6702 14.2% 0.25x coverage Statistics for read lengths: Min read length: 5\u003cbr\u003eMax read length: 98,366\u003cbr\u003eMean read length: 1998.91\u003cbr\u003eStandard deviation of read length: 2942.24\u003cbr\u003eMedian read length: 1,040\u003cbr\u003e\u003cbr\u003e Statistics for numbers of reads:\u003cbr\u003eNumber of reads: 47,093 Non-aligned reads 18051 38%\u003cbr\u003eAligned reads 29042 62% Number of reads \u0026gt;=1kb: 24,392 Statistics for bases in the reads: Number of bases in all reads: 94,134,729\u003cbr\u003eNumber of bases in reads \u0026gt;=1kb: 82,118,285\u003cbr\u003eGC Content of reads: 47.21 % Organism Genome size Number of reads aligning Percentage of aligned reads Mean depth of coverage","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"PD94bWwgdmVyc2lvbj0iMS4wIiBlbmNvZGluZz0iVVRGLTgiPz4KPHJlc291cmNlIHhtbG5zPSJodHRwOi8vZGF0YWNpdGUub3JnL3NjaGVtYS9rZXJuZWwtNCIgeG1sbnM6eHNpPSJodHRwOi8vd3d3LnczLm9yZy8yMDAxL1hNTFNjaGVtYS1pbnN0YW5jZSIgeHNpOnNjaGVtYUxvY2F0aW9uPSJodHRwOi8vZGF0YWNpdGUub3JnL3NjaGVtYS9rZXJuZWwtNCBodHRwOi8vc2NoZW1hLmRhdGFjaXRlLm9yZy9tZXRhL2tlcm5lbC00LjEvbWV0YWRhdGEueHNkIj4KICA8aWRlbnRpZmllciBpZGVudGlmaWVyVHlwZT0iRE9JIj4xMC42MDg0L005LkZJR1NIQVJFLjEwODQzNDM8L2lkZW50aWZpZXI+CiAgPGNyZWF0b3JzPgogICAgPGNyZWF0b3I+CiAgICAgIDxjcmVhdG9yTmFtZT5Lb25yYWQgUGFzemtpZXdpY3o8L2NyZWF0b3JOYW1lPgogICAgPC9jcmVhdG9yPgogICAgPGNyZWF0b3I+CiAgICAgIDxjcmVhdG9yTmFtZT5BdWRyZXkgRmFyYm9zPC9jcmVhdG9yTmFtZT4KICAgIDwvY3JlYXRvcj4KICAgIDxjcmVhdG9yPgogICAgICA8Y3JlYXRvck5hbWU+S2FyZW4gTW9vcmU8L2NyZWF0b3JOYW1lPgogICAgPC9jcmVhdG9yPgogICAgPGNyZWF0b3I+CiAgICAgIDxjcmVhdG9yTmFtZT5QYXVsIE8nTmVpbGw8L2NyZWF0b3JOYW1lPgogICAgPC9jcmVhdG9yPgogIDwvY3JlYXRvcnM+CiAgPHRpdGxlcz4KICAgIDx0aXRsZT5UaHJlZSBiYWN0ZXJpYWwgZ2Vub21lcyBydW4gb24gUjYgT3hmb3JkIE5hbm9wb3JlIE1pbklvbiBDaGVtaXN0cnk8L3RpdGxlPgogIDwvdGl0bGVzPgogIDxkZXNjcmlwdGlvbnM+CiAgICA8ZGVzY3JpcHRpb24gZGVzY3JpcHRpb25UeXBlPSJBYnN0cmFjdCI+Jmx0O3AmZ3Q7VGhyZWUgYmFjdGVyaWFsIGdlbm9tZXMgcG9vbGVkIGF0IGVxdWFsIEROQSBjb25jZW50cmF0aW9ucyBhbmQgcnVuIG9uIFI2IE94Zm9yZCBOYW5vcG9yZSBDaGVtaXN0cnkuIEJvcmVsbGlhIGJ1cmRvcmZlcmkgQjMxLCBFc2NoZXJpY2hpYSBjb2xpIEsxMiBhbmQgU3RyZXB0b215Y2VzIGF2ZXJtaXRpbGlzIE1BIDQ2ODAuJmx0Oy9wJmd0OwombHQ7cCZndDvCoCZsdDsvcCZndDsKJmx0O3AmZ3Q7Tm90ZSB0aGF0IHRoZXNlIGhhdmUgYmVlbiBydW4gdG9nZXRoZXIgYXMgYSBwb29sIHdpdGggbm8gYmFyY29kaW5nLiZsdDsvcCZndDsKJmx0O3AmZ3Q7wqAmbHQ7L3AmZ3Q7CiZsdDtwJmd0O1RoZSBPeGZvcmQgTmFub3BvcmUgcmVhZHMgYXJlIGNvbnRhaW5lZCBpbiB0aGUgZmlsZSBuaW50aHRyYW5jaGVfcmVuYW1lZC5mYXN0cS4gVGhlIHJlbWFpbmluZyBGQVNUQSBmaWxlcyBhcmUgdGhlIGNvcnJlc3BvbmRpbmcgcmVmZXJlbmNlIGdlbm9tZXMgaW5jbHVkZWQgZm9yIGNvbnZlbmllbmNlLiBUaGUgTGFtYmRhIENvbnRyb2wgRE5BIHNwaWtlLWluIHNlcXVlbmNlIGlzIGFsc28gaW5jbHVkZWQuwqAmbHQ7L3AmZ3Q7CiZsdDtwJmd0O8KgJmx0Oy9wJmd0OwombHQ7cCZndDtCaW9hbmFseXNlciB0cmFjZXMgYW5kIG1hdGVyaWFscyBhbmQgbWV0aG9kcyBtYXkgYmUgZm91bmQgaW4gdGhlIGF0dGFjaGVkIGZpbGUuwqAmbHQ7L3AmZ3Q7CiZsdDtwJmd0O8KgJmx0Oy9wJmd0OwombHQ7cCZndDtWZXJzaW9uIDEuOTEgTWV0ZXJpY2hvciBiYXNlY2FsbGVyIHVzaW5nIDJEIG9wdGlvbi4mbHQ7L3AmZ3Q7CiZsdDtwJmd0O1MuYXZlcm1pdGlsaXMgMS44eCBjb3ZlcmFnZSZsdDticiZndDtCLmJ1cmdkb3JmZXJpIDE4LjF4IGNvdmVyYWdlJmx0O2JyJmd0O0xhbWJkYSBjb250cm9sIHNwaWtlLWluIDEsMTMyeCBjb3ZlcmFnZSZsdDticiZndDtFLmNvbGkgNCw2NGtiIDY3MDIgMTQuMiUgMC4yNXggY292ZXJhZ2UmbHQ7L3AmZ3Q7CiZsdDtwJmd0O8KgJmx0Oy9wJmd0OwombHQ7cCZndDtTdGF0aXN0aWNzIGZvciByZWFkIGxlbmd0aHM6Jmx0Oy9wJmd0OwombHQ7cCZndDtNaW4gcmVhZCBsZW5ndGg6IDUmbHQ7YnImZ3Q7TWF4IHJlYWQgbGVuZ3RoOiA5OCwzNjYmbHQ7YnImZ3Q7TWVhbiByZWFkIGxlbmd0aDogMTk5OC45MSZsdDticiZndDtTdGFuZGFyZCBkZXZpYXRpb24gb2YgcmVhZCBsZW5ndGg6IDI5NDIuMjQmbHQ7YnImZ3Q7TWVkaWFuIHJlYWQgbGVuZ3RoOiAxLDA0MCZsdDticiZndDsmbHQ7YnImZ3Q7Jmx0Oy9wJmd0OwombHQ7cCZndDtTdGF0aXN0aWNzIGZvciBudW1iZXJzIG9mIHJlYWRzOiZsdDticiZndDtOdW1iZXIgb2YgcmVhZHM6IDQ3LDA5MyZsdDsvcCZndDsKJmx0O3AmZ3Q7Tm9uLWFsaWduZWQgcmVhZHMgMTgwNTEgMzglJmx0O2JyJmd0O0FsaWduZWQgcmVhZHMgMjkwNDIgNjIlJmx0Oy9wJmd0OwombHQ7cCZndDtOdW1iZXIgb2YgcmVhZHMgJmd0Oz0xa2I6IDI0LDM5MiZsdDsvcCZndDsKJmx0O3AmZ3Q7wqAmbHQ7L3AmZ3Q7CiZsdDtwJmd0O1N0YXRpc3RpY3MgZm9yIGJhc2VzIGluIHRoZSByZWFkczombHQ7L3AmZ3Q7CiZsdDtwJmd0O051bWJlciBvZiBiYXNlcyBpbiBhbGwgcmVhZHM6IDk0LDEzNCw3MjkmbHQ7YnImZ3Q7TnVtYmVyIG9mIGJhc2VzIGluIHJlYWRzICZndDs9MWtiOiA4MiwxMTgsMjg1Jmx0O2JyJmd0O0dDIENvbnRlbnQgb2YgcmVhZHM6IDQ3LjIxICUmbHQ7L3AmZ3Q7CiZsdDtwJmd0O8KgJmx0Oy9wJmd0OwombHQ7cCZndDtPcmdhbmlzbSBHZW5vbWUgc2l6ZSBOdW1iZXIgb2YgcmVhZHMgYWxpZ25pbmcgUGVyY2VudGFnZSBvZiBhbGlnbmVkIHJlYWRzIE1lYW4gZGVwdGggb2YgY292ZXJhZ2UmbHQ7L3AmZ3Q7CiZsdDtwJmd0OyZsdDsvcCZndDs8L2Rlc2NyaXB0aW9uPgogIDwvZGVzY3JpcHRpb25zPgogIDxzdWJqZWN0cz4KICAgIDxzdWJqZWN0IHNjaGVtZVVSST0iaHR0cDovL3d3dy5hYnMuZ292LmF1L2F1c3N0YXRzL2Fic0AubnNmLzAvNkJCNDI3QUI5Njk2QzIyNUNBMjU3NDE4MDAwNDQ2M0UiIHN1YmplY3RTY2hlbWU9IkZPUiI+NjAxMDIgQmlvaW5mb3JtYXRpY3M8L3N1YmplY3Q+CiAgPC9zdWJqZWN0cz4KICA8cHVibGlzaGVyPmZpZ3NoYXJlPC9wdWJsaXNoZXI+CiAgPHB1YmxpY2F0aW9uWWVhcj4yMDE0PC9wdWJsaWNhdGlvblllYXI+CiAgPGRhdGVzPgogICAgPGRhdGUgZGF0ZVR5cGU9IkNyZWF0ZWQiPjIwMTQtMDYtMjY8L2RhdGU+CiAgICA8ZGF0ZSBkYXRlVHlwZT0iVXBkYXRlZCI+MjAxNC0wNi0zMDwvZGF0ZT4KICA8L2RhdGVzPgogIDxyZXNvdXJjZVR5cGUgcmVzb3VyY2VUeXBlR2VuZXJhbD0iRGF0YXNldCI+RGF0YXNldDwvcmVzb3VyY2VUeXBlPgogIDxzaXplcz4KICAgIDxzaXplPjIwOTk5MjQ3OCBCeXRlczwvc2l6ZT4KICA8L3NpemVzPgogIDxyaWdodHNMaXN0PgogICAgPHJpZ2h0cyByaWdodHNVUkk9Imh0dHBzOi8vY3JlYXRpdmVjb21tb25zLm9yZy9saWNlbnNlcy9ieS80LjAvIj5DQyBCWSA0LjA8L3JpZ2h0cz4KICA8L3JpZ2h0c0xpc3Q+CjwvcmVzb3VyY2U+","url":"https://figshare.com/articles/dataset/Three_bacterial_genomes_run_on_R6_Oxford_Nanopore_MinIon_Chemistry/1084343","contentUrl":null,"metadataVersion":1,"schemaVersion":"http://datacite.org/schema/kernel-4","source":"mds","isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount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