{"data":{"id":"10.25387/g3.7994039.v1","type":"dois","attributes":{"doi":"10.25387/g3.7994039.v1","prefix":"10.25387","suffix":"g3.7994039.v1","identifiers":[{"identifier":"https://doi.org/10.25387/g3.7994039.v1","identifierType":"DOI"}],"alternateIdentifiers":[{"alternateIdentifierType":"DOI","alternateIdentifier":"https://doi.org/10.25387/g3.7994039.v1"}],"creators":[{"name":"Zhang, Hui","nameType":"Personal","givenName":"Hui","familyName":"Zhang","affiliation":[],"nameIdentifiers":[]},{"name":"NATHAN HALL","affiliation":[],"nameIdentifiers":[]},{"name":"Goertzen, Leslie R.","nameType":"Personal","givenName":"Leslie R.","familyName":"Goertzen","affiliation":[],"nameIdentifiers":[]},{"name":"Chen, Charles Y.","nameType":"Personal","givenName":"Charles Y.","familyName":"Chen","affiliation":[],"nameIdentifiers":[]},{"name":"Peatman, Eric","nameType":"Personal","givenName":"Eric","familyName":"Peatman","affiliation":[],"nameIdentifiers":[]},{"name":"Jinesh Patel","affiliation":[],"nameIdentifiers":[]},{"name":"J. Scott McElroy","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Supplemental Material for Zhang et al., 2019"}],"publisher":"Figshare","container":{},"publicationYear":2019,"subjects":[{"subject":"70302 Agronomy","subjectScheme":"FOR"},{"subject":"FOS: Agriculture, forestry and fisheries","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"}],"contributors":[],"dates":[{"date":"2019-04-22","dateType":"Created"},{"date":"2019-04-22","dateType":"Updated"},{"date":"2019","dateType":"Issued"}],"language":null,"types":{"ris":"GEN","bibtex":"misc","citeproc":"article","schemaOrg":"Collection","resourceType":"Fileset","resourceTypeGeneral":"Collection"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.1534/g3.119.400214","relatedIdentifierType":"DOI"},{"relationType":"IsIdenticalTo","relatedIdentifier":"10.25387/g3.7994039","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["1132449 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"CC BY 4.0","rightsUri":"https://creativecommons.org/licenses/by/4.0"}],"descriptions":[{"description":"\u003cb\u003eTable S1 The number and\npercentage of total of cellular component, molecular function, biological\nprocess of GO terms in seven transcriptome data sets. Each contig has multiple\nGO terms during annotation leading to the number of GO terms more than contigs. \u003c/b\u003e\u003cb\u003e\u003c/b\u003e\u003cb\u003eFigure\nS1\u003c/b\u003e\nGO classifications of all \u003ci\u003eEleusine\u003c/i\u003e\nspecies’ transcriptomes. The results were summarized in three main categories:\nbiological process, cellular component and molecular function. \u003cb\u003eFigure\nS2\u003c/b\u003e Individual nuclear gene trees were constructed considering to predict\nsubgenome membership. These trees mainly include five types according to the\nrelationships among \u003ci\u003eE. indica\u003c/i\u003e, \u003ci\u003eE. tristachya\u003c/i\u003e, \u003ci\u003eE. africana\u003c/i\u003e, and \u003ci\u003eE. coracana\u003c/i\u003e:\n(A) AA (Both \u003ci\u003eE. coracana\u003c/i\u003e and \u003ci\u003eE. africana\u003c/i\u003e are in the same clade with\u003ci\u003e E. indica\u003c/i\u003e, and \u003ci\u003eE. tristachya\u003c/i\u003e.), (B) AB (\u003ci\u003eE.\ncoracana\u003c/i\u003e is in the same clade with \u003ci\u003eE.\nindica\u003c/i\u003e, and \u003ci\u003eE. tristachya\u003c/i\u003e, while \u003ci\u003eE. africana\u003c/i\u003e is not.), (C) BA (\u003ci\u003eE. coracana\u003c/i\u003e is not in the same clade\nwith \u003ci\u003eE. indica\u003c/i\u003e, and \u003ci\u003eE. tristachya\u003c/i\u003e, while \u003ci\u003eE. africana\u003c/i\u003e is.), (D) BB (\u003ci\u003eE. indica\u003c/i\u003e, and \u003ci\u003eE. tristachya\u003c/i\u003e are in the same clade, while \u003ci\u003eE. africana\u003c/i\u003e and \u003ci\u003eE. coracana\u003c/i\u003e\nare not in the same clade with \u003ci\u003eE. indica\u003c/i\u003e\nand \u003ci\u003eE. tristachya\u003c/i\u003e.), (E) Indeterminate\n(\u003ci\u003eE. indica\u003c/i\u003e, and \u003ci\u003eE. tristachya\u003c/i\u003e are not in the same clade). The number of each type\nis AA: AB: BA: BB: Indeterminate = 5: 10: 7: 32: 17. Inter, \u003ci\u003eE. intermedia\u003c/i\u003e; multi, \u003ci\u003eE. multiflora\u003c/i\u003e; flocc, \u003ci\u003eE. floccifolia\u003c/i\u003e; indica, \u003ci\u003eE. indica\u003c/i\u003e; trist, \u003ci\u003eE. tristachya\u003c/i\u003e; afric, \u003ci\u003eE. africana\u003c/i\u003e;\ncorac, \u003ci\u003eE. coracana\u003c/i\u003e; bra, \u003ci\u003eBrachypodium sylvaticum\u003c/i\u003e; rice, \u003ci\u003eOryza sativa\u003c/i\u003e; and maize, \u003ci\u003eZea mays\u003c/i\u003e.\u003cbr\u003e","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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