{"data":{"id":"10.25387/g3.6249410.v1","type":"dois","attributes":{"doi":"10.25387/g3.6249410.v1","prefix":"10.25387","suffix":"g3.6249410.v1","identifiers":[{"identifier":"https://doi.org/10.25387/g3.6249410.v1","identifierType":"DOI"}],"alternateIdentifiers":[{"alternateIdentifierType":"DOI","alternateIdentifier":"https://doi.org/10.25387/g3.6249410.v1"}],"creators":[{"name":"Belamkar, Vikas","nameType":"Personal","givenName":"Vikas","familyName":"Belamkar","affiliation":[],"nameIdentifiers":[]},{"name":"Guttieri, Mary J.","nameType":"Personal","givenName":"Mary J.","familyName":"Guttieri","affiliation":[],"nameIdentifiers":[]},{"name":"Hussain, Waseem","nameType":"Personal","givenName":"Waseem","familyName":"Hussain","affiliation":[],"nameIdentifiers":[]},{"name":"Jarquín, Diego","nameType":"Personal","givenName":"Diego","familyName":"Jarquín","affiliation":[],"nameIdentifiers":[]},{"name":"El-Basyoni, Ibrahim","nameType":"Personal","givenName":"Ibrahim","familyName":"El-Basyoni","affiliation":[],"nameIdentifiers":[]},{"name":"Poland, Jesse","nameType":"Personal","givenName":"Jesse","familyName":"Poland","affiliation":[],"nameIdentifiers":[]},{"name":"Lorenz, Aaron J.","nameType":"Personal","givenName":"Aaron J.","familyName":"Lorenz","affiliation":[],"nameIdentifiers":[]},{"name":"P. Stephen Baenziger","affiliation":[],"nameIdentifiers":[]}],"titles":[{"title":"Supplemental Material for Belamkar et al., 2018"}],"publisher":"Figshare","container":{},"publicationYear":2018,"subjects":[{"subject":"70302 Agronomy","subjectScheme":"FOR"},{"subject":"FOS: Agriculture, forestry and fisheries","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"60102 Bioinformatics","subjectScheme":"FOR"},{"subject":"FOS: Computer and information sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"60408 Genomics","subjectScheme":"FOR"},{"subject":"FOS: Biological sciences","schemeUri":"http://www.oecd.org/science/inno/38235147.pdf","subjectScheme":"Fields of Science and Technology (FOS)"},{"subject":"Molecular Biology"},{"subject":"Plant Biology"},{"subject":"60412 Quantitative Genetics (incl. Disease and Trait Mapping Genetics)","subjectScheme":"FOR"}],"contributors":[],"dates":[{"date":"2018-06-25","dateType":"Created"},{"date":"2018-06-25","dateType":"Updated"},{"date":"2018","dateType":"Issued"}],"language":null,"types":{"ris":"GEN","bibtex":"misc","citeproc":"article","schemaOrg":"Collection","resourceType":"Fileset","resourceTypeGeneral":"Collection"},"relatedIdentifiers":[{"relationType":"IsSupplementTo","relatedIdentifier":"10.1534/g3.118.200415","relatedIdentifierType":"DOI"},{"relationType":"IsIdenticalTo","relatedIdentifier":"10.25387/g3.6249410","relatedIdentifierType":"DOI"}],"relatedItems":[],"sizes":["179663042 Bytes"],"formats":[],"version":null,"rightsList":[{"rights":"CC BY 4.0","rightsUri":"https://creativecommons.org/licenses/by/4.0"}],"descriptions":[{"description":"File S1 contains supplementary Tables S1-S2 and\nFigures S1-S7. \u003cbr\u003eFile S2 has details of the preliminary yield trials (F\u003csub\u003e3:6\u003c/sub\u003e)\nand advanced yield trials (F\u003csub\u003e3:7\u003c/sub\u003e) grown in 2012-2015 and 2013-2016.\nThe experimental design, number of locations, number of replicates per\nlocation, heritability for yield within and across locations is provided. \u003cbr\u003eFile\nS3 contains the R script developed for analyzing preliminary yield trials (F\u003csub\u003e3:6\u003c/sub\u003e)\ngrown in an augmented design. Mixed models incorporated both experimental\ndesign and spatial variation. \u003cbr\u003eFile S4 provides an example phenotypic dataset\nfor utilizing the R script provided in File S3. \u003cbr\u003eFile S5 shows the SNP calling\naccuracy of 20 lines genotyped by genotyping-by-sequencing at least twice\n(biological replicates) over the years. The accuracy is presented as sequential\npairwise comparisons of 20 unique samples. \u003cbr\u003eFile S6 contains the yield data\n(best linear unbiased predictors) of the preliminary yield trials (F\u003csub\u003e3:6\u003c/sub\u003e)\ngrown in 2012-2015 used for genomic selection. \u003cbr\u003eFile S7 contains the SNP marker\ndata of 26,925 SNPs on the 1,110 F\u003csub\u003e3:6\u003c/sub\u003e lines grown in 2012-2015. The\nhomozygous major, homozygous minor, and heterozygous genotypes are coded as 1,\n0, and 0.5 in the genotype matrix. \u003cbr\u003eFile S8 shows the Akaike Information\nCriterion (AIC) values and the residual plots for each of the mixed models\ntested for the yield data collected on the preliminary yield trial (F\u003csub\u003e3:6\u003c/sub\u003e)\ngrown in McCook, NE in 2014.","descriptionType":"Abstract"}],"geoLocations":[],"fundingReferences":[],"xml":"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